Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq697 93.3 3e-14 seq613 89.7 4e-13 >seq697 Length=319182 Score = 93.3 bits (102), Expect = 3e-14 Identities = 243/365 (67%), Gaps = 8/365 (2%) Strand=Plus/Plus Query 22540 CCAGAAGCCAGA-GCTTTCTATGGGTTTCAGGTGGCAATGGAAAATATACATGCTGAAAT 22598 || ||||||||| ||||| ||||| ||| | | |||||||||||||||||| | |||| Sbjct 146996 CCTGAAGCCAGATGCTTT-TATGGATTTTAAATAGCAATGGAAAATATACATTCAGAAAC 147054 Query 22599 GTATACTCAGCTGATTATCACATTAGTAGCTAAAGAGAATCAA--GCCGCATTGTTTTCA 22656 ||| ||| |||| ||| | || | | || ||| || | || | | || Sbjct 147055 TTATTCTCTTTTGATAGACACTTACATAACCGATGAAAATGAAAAGAACTATCTTCTACA 147114 Query 22657 -GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGGGCTGCACAATGGCTGAA 22715 ||| ||| || |||| | || || |||||| ||||||| ||||| | || Sbjct 147115 TGCAATTGACAATGTGCCTGTTATTCAAAAGAAGGCAATGTGGGCTATGAAATGGATAAA 147174 Query 22716 TGCCACACATAAGTCTATCGCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCAT 22775 || | || | || | || | | | |||||||| |||||||||||| || | Sbjct 147175 TGAGA---ATGATTCATTTGCTGAGAGATTGATTGCCTTTGCTGCTGTTGAAGGCATCTT 147231 Query 22776 GTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTT 22835 |||||||| |||||| |||||||| ||| | || ||| | || | ||||| || | Sbjct 147232 CTTTTCTGGTTCATTTTGTGCCATATTTTGGATCAAAAAAAGATCATTGATGCCTGGACT 147291 Query 22836 GGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTAT 22895 | || || || || || ||| | || |||||||| || |||||||||||| | Sbjct 147292 CACCTTCTCAAATGAATTAATTTCAAGGGATGAAGGTCTCCATACAGACTTTGCTTGTCT 147351 Query 22896 GCTGT 22900 |||| Sbjct 147352 CCTGT 147356 >seq613 Length=410769 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| |||||||||||| || | |||||||| |||||| || ||||| ||| | Sbjct 197761 GCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATC 197702 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 || ||| | || | |||||||| | | ||||| || || || ||| | || ||| Sbjct 197701 AAAAAAAGATCATTGATGCCAGGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAA 197642 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTG---T 22926 ||||| || |||||||||||| | || | | || ||| || || | | | Sbjct 197641 GGTCTCCATACAGACTTTGCTTGTCTTCTTTACAAACATATGATTAATAAGTTGAGTATT 197582 Query 22927 CAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGA 22970 || |||| | ||| ||||||| ||| ||| ||||| ||||| Sbjct 197581 CA--ACGA-GTTCATGAAATCATTTCTTCTGCTGTTGAAATTGA 197541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356230573906891