Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq613 313 2e-80 seq697 253 2e-62 >seq613 Length=410769 Score = 313 bits (346), Expect = 2e-80 Identities = 576/839 (69%), Gaps = 29/839 (3%) Strand=Plus/Plus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||| || |||| | | ||| || ||||| | ||| || ||||| || ||||| Sbjct 197272 AAAAGTCTGCATCCATAGTAAATACTTTATCTTATTTTTTGCTCATAACTCCAGCTTTTT 197331 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 | || || | ||||||| |||| ||||| ||||||||||||| | ||||| | |||| Sbjct 197332 GGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCATATCCA 197391 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 | | ||||| ||||| |||| | | | ||| | || | | | |||| |||| Sbjct 197392 TCCATTCAAAAGGATTCTTTGAATTGTAGATCTTAGGAGCTCCCAATGCAAATATCAATC 197451 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 |||| |||| || |||||||||| ||| |||| ||||||| || ||||||| | Sbjct 197452 TATCTGCAACGAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATTAGTTCAA 197511 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTG 13824 | || | | | | ||||||||||| || ||||| | || || || Sbjct 197512 CTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAACAGC-------AGAAGAAATG 197564 Query 13825 ---TAATAATCTCATT--AGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCA 13877 | || | ||| || | | | |||| | | |||||| ||| | ||| ||| Sbjct 197565 ATTTCATGAACTCGTTGAATACTCAACTTATTAATCATATGTTTGTAAAGAAGACAAGCA 197624 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 || || ||| || || |||||||| ||| | ||| |||||||| || | ||||||| Sbjct 197625 AAGTCTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGC 197684 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 |||||| || |||||| | ||||||||| ||| |||||| || |||||||| || || Sbjct 197685 ATCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCT 197744 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 ||||| |||||||| || || |||| ||| |||| || | || || || |||||| Sbjct 197745 TCAACAGCAGCAAAGGCAATCAATCTTTCAGCAAATGAATCATTATTATTA---ATCCAT 197801 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || | ||||| | ||| |||| ||||| | || | ||||| |||| | | | Sbjct 197802 TTCATTGCCCACATTGCTTTCTTTTGAATAACAGGCACATTATCAATGGCATGGAGAAGA 197861 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCA 14174 || | |||||| || | | || || |||||||| |||| | ||| |||| Sbjct 197862 TAGTTCTTCTCATTTTCATCGGTTATATAGGTATCAATCAAAAGTGA---ATAGGTTTCT 197918 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 ||||| ||||| ||||||||||| | ||| ||||| |||||||| ||||| | ||| Sbjct 197919 GAGTGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAACTTGC 197978 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| | | || || |||||| |||||||| || ||||||||||| |||||||| Sbjct 197979 ACTTCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGCAAAG 198038 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGTTTTTTCCAATC 14350 || || | || | |||||||||| |||| ||||| | ||||||||| |||||| Sbjct 198039 AAGGCAAGTACATATTTAATAAAG---TGCTTTTCATCGGCAGTGAGTTTTTCCCAATC 198094 >seq697 Length=319182 Score = 253 bits (280), Expect = 2e-62 Identities = 549/813 (68%), Gaps = 15/813 (2%) Strand=Plus/Minus Query 13544 AAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTT 13603 ||| || ||||| | ||| ||| || || || ||||||||| || | |||||| | Sbjct 147676 AAATACTTTATCTTATTTTTTACTCATGACTCCAGCTTTTTGATAGTCTCCCACTCTTCT 147617 Query 13604 TTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTAT 13663 ||| ||||| || |||||||||| || ||||| | ||||| | ||||| ||||| | Sbjct 147616 TTCGAAGAAATTGGTTTTACCTTACAAAGATATCATATCCATCCACTCAAAAGGATTCTT 147557 Query 13664 TGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAAT 13723 || | | | || | ||| | | | |||| |||||||| || | ||| ||||| Sbjct 147556 CGAATTGTAAATCTTGGGAGCACCCAATGCAAATATCAATCTATCTGCTACAAATTCAAT 147497 Query 13724 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAA 13783 ||||| ||| |||| ||||||| || || |||| || || | | || ||| Sbjct 147496 ATATTATTTCATCAAATTGGAATTCATTCCAATAAGTTCAACTGGTAG-AGCTTCACTAA 147438 Query 13784 A-AATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAG 13842 ||||||||||| || |||||| | ||| || ||| | | |||| Sbjct 147437 TGAATTCTTTTTCAATTTCAACAGCCGATGATATTATTTCATGAATTCTTTGATTACTC- 147379 Query 13843 GAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATC 13900 | |||| || ||| || | | | ||| ||||| || ||| || || ||||| Sbjct 147378 -ATTTTATTAACTAAATGCTTGTACAGGAGACAAGCAAAGTCTGTATGGAGACCTTCATC 147320 Query 13901 TCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCA 13960 || ||| | ||| ||||| || || | ||| ||||||||| || |||||| | ||| Sbjct 147319 CCTTGAAATTAATTCATTTGAGAAGGTGAGTCCAGGCATCAATGATCTTTTTTTGATCCA 147260 Query 13961 AAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAA 14020 |||||| ||| |||||| || |||||||| || || ||||| |||||||| || || || Sbjct 147259 AAATATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATCAA 147200 Query 14021 TCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttt 14080 || || |||| || | || | || ||||||||| ||||||| | || || Sbjct 147199 TCTCTCAGCAAATGAATCATTCTCATT---TATCCATTTCATAGCCCACATTGCCTTCTT 147143 Query 14081 tttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGA 14140 || ||||| | || | ||||| |||| | | ||| | ||| || || | | Sbjct 147142 TTGAATAACAGGCACATTGTCAATTGCATGTAGAAGATAGTTCTTTTCATTTTCATCGGT 147083 Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||||| || || || | | ||| |||| || ||||| |||||||| ||||| | Sbjct 147082 TATGTAAGTGTCTATCAAAAGAGAATAAGTTTCTGAATGTATATTTTCCATTGCTATTTA 147023 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAA 14260 ||| |||||||||||||| ||||| | | || ||||| | | || || |||||| Sbjct 147022 AAATCCATAAAAGCATCTGGCTTCAGGCACTTAAACTTCTGTACAGAACTATTAGGCCAA 146963 Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA 14320 |||||||| || ||||||||||| ||||||||||| || | | | ||||||| | Sbjct 146962 GTTTTCATTCACAATACCATCACTGGCTGCAAAAAAGGCTAGGACATACTTAATAA---A 146906 Query 14321 TTGCTCTTCAT-TGTTG--AGTTTTTTCCAATC 14350 |||| ||||| | || || |||| |||||| Sbjct 146905 ATGCTTTTCATCAGCTGTAAGCTTTTCCCAATC 146873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723820369800