Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq613 284 1e-71 seq697 226 3e-54 >seq613 Length=410769 Score = 284 bits (314), Expect = 1e-71 Identities = 570/836 (68%), Gaps = 23/836 (3%) Strand=Plus/Plus Query 13313 aaaaaTCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372 |||| || |||| | | ||| || ||||| | ||| || ||||| || ||||| Sbjct 197272 AAAAGTCTGCATCCATAGTAAATACTTTATCTTATTTTTTGCTCATAACTCCAGCTTTTT 197331 Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432 | || || | ||||||| |||| || || ||||||||||||| | ||||| | |||| Sbjct 197332 GGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCATATCCA 197391 Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 | | || || ||||| |||| | | | ||| | || | | | |||| |||| Sbjct 197392 TCCATTCAAAAGGATTCTTTGAATTGTAGATCTTAGGAGCTCCCAATGCAAATATCAATC 197451 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 |||| |||| || |||||||||| ||| |||| ||||||| || ||||||| | Sbjct 197452 TATCTGCAACGAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATTAGTTCAA 197511 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 | || | | | | | ||||||||||| || ||||| | | ||| || | Sbjct 197512 CTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAACAGCA--GAAGA-AATGAT-T 197567 Query 13613 TAATAATGTCATT--AGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAAA 13668 | || | || || | | | |||| | | |||||| ||| | ||| ||||| Sbjct 197568 TCATGAACTCGTTGAATACTCAACTTATTAATCATATGTTTGTAAAGAAGACAAGCAAAG 197627 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 || ||| || || |||||||| ||| | ||| |||||||| || | |||||||||| Sbjct 197628 TCTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGCATC 197687 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 ||| || |||||| | ||||||||| ||| ||||| || |||||||| || || ||| Sbjct 197688 AATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCTTCA 197747 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848 || |||||||| || || | || ||| |||| || | || || || |||||||| Sbjct 197748 ACAGCAGCAAAGGCAATCAATCTTTCAGCAAATGAATCATTATTATT---AATCCATTTC 197804 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908 | ||||| | ||| |||| ||||| | || | || || |||| || | || Sbjct 197805 ATTGCCCACATTGCTTTCTTTTGAATAACAGGCACATTATCAATGGCATGGAGAAGATAG 197864 Query 13909 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAGAG 13965 | |||||| || | | || || |||||||| |||| | ||| |||| ||| Sbjct 197865 TTCTTCTCATTTTCATCGGTTATATAGGTATCAATCAAAAGTGA---ATAGGTTTCTGAG 197921 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 || ||||| || |||||||| | ||| ||||| || ||||| ||||| | ||| || Sbjct 197922 TGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAACTTGCACT 197981 Query 14026 TCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAAT 14085 || | | || || |||||||||||||| |||||||||||||| |||||||| || Sbjct 197982 TCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGCAAAGAAG 198041 Query 14086 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGTTTTTTCCAATC 14138 || | || | |||||||||| |||| ||||| | ||||||||| |||||| Sbjct 198042 GCAAGTACATATTTAATAAAG---TGCTTTTCATCGGCAGTGAGTTTTTCCCAATC 198094 >seq697 Length=319182 Score = 226 bits (250), Expect = 3e-54 Identities = 543/814 (67%), Gaps = 17/814 (2%) Strand=Plus/Minus Query 13332 AAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTT 13391 ||| || ||||| | ||| ||| || || || ||||||||| || | |||||| | Sbjct 147676 AAATACTTTATCTTATTTTTTACTCATGACTCCAGCTTTTTGATAGTCTCCCACTCTTCT 147617 Query 13392 TTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGT 13451 ||| || || || |||||||||| || ||||| | ||||| | || || ||||| | Sbjct 147616 TTCGAAGAAATTGGTTTTACCTTACAAAGATATCATATCCATCCACTCAAAAGGATTCTT 147557 Query 13452 TGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAAT 13511 || | | | || | ||| | | | |||| |||||||| || | ||| ||||| Sbjct 147556 CGAATTGTAAATCTTGGGAGCACCCAATGCAAATATCAATCTATCTGCTACAAATTCAAT 147497 Query 13512 ATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAA 13571 ||||| ||| |||| ||||||| || || |||| || || | | | | | Sbjct 147496 ATATTATTTCATCAAATTGGAATTCATTCCAATAAGTTCAACTGGTAGAGCTTCACTAAT 147437 Query 13572 AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC--TTAATAATGTCATTAGAA 13629 ||||||||||| || |||||| | | ||| || | | ||| | | |||| Sbjct 147436 GAATTCTTTTTCAATTTCAACAGCC--GATGATATTATTTCATGAATTCTTTGATTACTC 147379 Query 13630 GGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCAT 13687 | |||| || ||| || | | | ||| ||||| || ||| || || |||| Sbjct 147378 --ATTTTATTAACTAAATGCTTGTACAGGAGACAAGCAAAGTCTGTATGGAGACCTTCAT 147321 Query 13688 CTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACC 13747 | || ||| | ||| ||||| || || | ||| ||||||||| || |||||| | || Sbjct 147320 CCCTTGAAATTAATTCATTTGAGAAGGTGAGTCCAGGCATCAATGATCTTTTTTTGATCC 147261 Query 13748 AAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTA 13807 ||||||| ||| ||||| || |||||||| || || ||||| |||||||| || || | Sbjct 147260 AAAATATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATCA 147201 Query 13808 GTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttttt 13867 || || |||| || | || | ||| |||||||| ||||||| | || | Sbjct 147200 ATCTCTCAGCAAATGAATCATTCTCATTT---ATCCATTTCATAGCCCACATTGCCTTCT 147144 Query 13868 ttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTG 13927 ||| ||||| | || | || ||||||| | | || | ||| || || | | Sbjct 147143 TTTGAATAACAGGCACATTGTCAATTGCATGTAGAAGATAGTTCTTTTCATTTTCATCGG 147084 Query 13928 AAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCT 13987 ||||| || || || | | ||| |||| || ||||| ||||| || ||||| | Sbjct 147083 TTATGTAAGTGTCTATCAAAAGAGAATAAGTTTCTGAATGTATATTTTCCATTGCTATTT 147024 Query 13988 GAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCA 14047 ||| |||||||| ||||| ||||| | | || || || | | || || |||| Sbjct 147023 AAAATCCATAAAAGCATCTGGCTTCAGGCACTTAAACTTCTGTACAGAACTATTAGGCCA 146964 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGT 14107 |||||||||| |||||||||||||| ||||||||||| || | | | ||||||| Sbjct 146963 AGTTTTCATTCACAATACCATCACTGGCTGCAAAAAAGGCTAGGACATACTTAATAA--- 146907 Query 14108 ATTGCTCTTCAT-TGTTG--AGTTTTTTCCAATC 14138 | |||| ||||| | || || |||| |||||| Sbjct 146906 AATGCTTTTCATCAGCTGTAAGCTTTTCCCAATC 146873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584630295080