Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq36 82.4 6e-11 >seq36 Length=667686 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 ||| || || || |||| ||| || |||| | ||| ||||| || | || | | | Sbjct 163424 TCTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATCTGAAAGAGTTCTTCC 163483 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 ||| || | ||| || || ||||||||||||| | |||||| | || | |||||||| Sbjct 163484 GTCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGTGGAATTCCTTCTTT 163543 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| | ||||| ||| ||||| || ||| || || | || || Sbjct 163544 ATCTTAAATCTTAGCCTTGACAGCATCAATGGTGTCTGAAGGCTCCACATCAAGTGTGAT 163603 Query 43074 Agtttttccggttagagttttcacaaaaatttgcat--tttcttaattttattt 43125 ||| ||||| || || ||||| |||||||||| ||| | | |||| |||| || Sbjct 163604 AGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACATAATATTTTAAATTTAATT 163657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366360384426