Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq680 87.8 1e-12 seq36 82.4 5e-11 >seq680 Length=357438 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| |||||||| | ||| || ||||| | || || ||||||| ||||| ||||| | Sbjct 173418 CACCACCTCTTAATCTCAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTG 173477 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | | | ||| || | ||||||||| || || || | || | || | | Sbjct 173478 AAAGTGTTCTTCCGTCTTCAAGTTGCTTTCCTGCGAAAATCAATCTTTATTAATCAGGAG 173537 Query 33261 GTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | || |||||||| || |||| |||| | |||| | ||| ||||| || | Sbjct 173538 GAATTCCTTCTTTATCTTAAATCTTGGCCT---TGACTGCATCAATTGTGTCTGATGGCT 173594 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| || ||||| || || ||||||||||| ||||| || ||||||| ||| || Sbjct 173595 CAACATCAAGAGTGATGGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACATATT 173649 >seq36 Length=667686 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| |||||||| | ||| || || || | || || ||||||| ||||| ||||| | Sbjct 163411 CACCACCTCTTAATCTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATCTG 163470 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | | | | ||| || | ||||||||| ||| || || | || || || | | Sbjct 163471 AAAGAGTTCTTCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGTG 163530 Query 33261 GTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | || |||||||| || |||| |||| | || | | ||| ||||| || | Sbjct 163531 GAATTCCTTCTTTATCTTAAATCTTAGCCT---TGACAGCATCAATGGTGTCTGAAGGCT 163587 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||||||||| ||||| || ||||||| ||| Sbjct 163588 CCACATCAAGTGTGATAGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 163639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318774892083906