Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq60 98.7 7e-16 seq99 93.3 3e-14 seq36 93.3 3e-14 seq680 91.5 1e-13 seq502 82.4 5e-11 seq71 82.4 5e-11 >seq60 Length=234462 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| || || || || || || || |||| || |||||||| || Sbjct 129099 CCACCTCTCAATCTCAAGACTAAGTGAAGAGTTGATTCCTTTTAGATGTTATAATC-TTA 129157 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || | |||| || ||||| |||||||| || || | | || | || | || Sbjct 129158 AAGTGTTCTTCCATCCTCTAATTGCTTTCCTGCGAAAATGAGTCTTTATTAATCAGGTGG 129217 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||||| |||||| | ||| ||||||| | | || || Sbjct 129218 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCATCAATAGTATCTTCTGACTTTAC 129277 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| ||||| ||||| ||||||| || || ||||| ||||| || Sbjct 129278 ATCGAGAGTAATAGTTTTTCCGGTTAGGGTTTTTACAAAAATTTGAAT 129325 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 43886 AATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTA 43945 ||||| |||||||||||||||| || || || || | ||| || ||||| || ||| Sbjct 128862 AATCAATAACCTCCTCTCAATCTCAATACTAAGTGAATTGTGGATTCCTTTTGGATGTTA 128921 Query 43946 TAATCGTTTAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTG 44004 ||||| | || || || ||| || |||| |||||||||||| || | | || | Sbjct 128922 TAATC-TCCAAGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATTAGTCTTTATTA 128980 Query 44005 GTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGC 44064 || | || | ||||| || || |||||| ||| | |||| ||| || | | Sbjct 128981 ATCAGGTGGGATTCCTTCCTTGTCCTGGATTTTTGATTTAATCATATCAATTGTTTAGTC 129040 Query 44065 CGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| ||||| | |||||||| || || | | | |||| ||||| |||| ||| Sbjct 129041 TGGCTCAACATCAAGAGTAATTGTCTTTCCACTAAGATTCTTTACAAAAATTTACAT 129097 >seq99 Length=47800 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||| || || || || || ||| || |||| || |||||||| | Sbjct 7402 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATC-TGA 7344 Query 43955 AATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || || ||| || |||| ||||||||||| || | | || | || | || Sbjct 7343 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 7284 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| ||||||| ||||| ||| ||| |||| || || || Sbjct 7283 GATTCCTTCCTTATCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAAC 7224 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | || || ||||| || ||||| || || |||||||||||||| Sbjct 7223 ATCAAGAGTGATGGTTTTTCCAGTTAATGTTTTTACAAATATTTGCAT 7176 >seq36 Length=667686 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| || || || || || || ||||||| |||||||||||| Sbjct 163412 ACCACCTCTTAATCTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATC--- 163468 Query 43954 TAATTGACGCTCATC-GTC--CAA-TTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCT 44009 | | || | || || ||| ||| ||| ||||||||||| ||||| | || || || Sbjct 163469 TGAAAGA-GTTCTTCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAG 163527 Query 44010 GAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCT 44069 | || | |||||||||||| |||| || ||||| | ||| || |||| |||| Sbjct 163528 GTGGAATTCCTTCTTTATCTTAAATCTTAGCCTTGACAGCATCAATGGTGTCTGAAGGCT 163587 Query 44070 CCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||| | || || || || || || | || || ||||| |||| ||| Sbjct 163588 CCACATCAAGTGTGATAGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 163639 >seq680 Length=357438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| || || ||||| || || ||||||| |||||||||||| | Sbjct 173419 ACCACCTCTTAATCTCAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATC-TG 173477 Query 43954 TAATTGACGCTCA-TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || || || || | ||| |||||||| || ||||| | || | || ||| Sbjct 173478 AAAGTGTTCTTCCGTCTTCAAGTTGCTTTCCTGCGAAAATCAATCTTTATTAATCAGGAG 173537 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||||||||| |||| || ||||| | ||| || |||| ||||| | Sbjct 173538 GAATTCCTTCTTTATCTTAAATCTTGGCCTTGACTGCATCAATTGTGTCTGATGGCTCAA 173597 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| | || || || || || || | || || ||||| |||| ||| Sbjct 173598 CATCAAGAGTGATGGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 173646 >seq502 Length=458689 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 43886 AATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTA 43945 |||||| | || ||||| ||||| || || || || || ||| || |||| || ||| Sbjct 103607 AATCATTAGCCACCTCTTAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTA 103548 Query 43946 TAATCGTTTAATTGACGCTC-ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTG 44004 ||||| | || || || ||| || |||| ||||||||||| || | | || | Sbjct 103547 TAATC-TGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTA 103489 Query 44005 GTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGC 44064 || | || | ||||| || ||| ||||||| ||||| ||| ||| |||| Sbjct 103488 ATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGA 103429 Query 44065 CGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| | || || ||||| || || |||||||| || || |||| ||| Sbjct 103428 TGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 103372 >seq71 Length=215326 Score = 82.4 bits (90), Expect = 5e-11 Identities = 162/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 43886 AATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTA 43945 |||||| | ||||||||||||||||| ||||| || || ||| || |||| ||| ||| Sbjct 118748 AATCATTAGCCTCCTCTCAATCTTAAAACCAAGTGAAGTGTGGATTCCTTTTAAATGTTA 118807 Query 43946 TAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTG 44004 || || | || || | | || || |||| ||||| || || || | | ||| | Sbjct 118808 TAGTC-TGAAAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCGAAGATAAGTCTTTGTTA 118866 Query 44005 GTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGC 44064 || | || | ||||| |||||| | ||||| || || | ||| ||| || | Sbjct 118867 ATCGGGTGGGATTCCTTCCTTATCTTAGATTTTAGCCTTAACAGCATCAATAGTGTCAGA 118926 Query 44065 CGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| | || |||||||| || || | ||||| || || |||| ||| Sbjct 118927 TGGTTCAACATCAAGAGTGATTGTTTTTCCTGTAAGTGTCTTGACGAAGATTTACAT 118983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354774586275156