Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq697 264 1e-65 seq613 241 1e-58 >seq697 Length=319182 Score = 264 bits (292), Expect = 1e-65 Identities = 539/790 (68%), Gaps = 23/790 (3%) Strand=Plus/Minus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || | |||||| |||| || || || ||||| |||| || || || | Sbjct 147640 TTTTTGATAGTCTCCCACTCTTCTTTCGAAGAAATTGGTTTTACCTTACAAAGATATCAT 147581 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA----CACCCTAATTCTA 12974 ||||| | || |||||||| |||||| | ||| | || ||||| ||| | | Sbjct 147580 ATCCATCCACTCAAAAGGATTCTTCGAA---TTGTAAATCTTGGGAGCACCC-AATGCAA 147525 Query 12975 GTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTA 13034 || |||||| || || ||||| || || || | |||||| |||| | |||||||| | Sbjct 147524 ATATCAATCTATCTGCTACAAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAA 147465 Query 13035 TTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAA 13094 | | || || || | |||||| | | || | |||||| || ||||| || |||| | Sbjct 147464 TAAGTTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTCAACAGC--CGATGA 147407 Query 13095 CTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT-----AGATGCTTAAACATCAT 13149 ||| | | | || | |||| | || |||| || | |||||| ||| | Sbjct 147406 -TAT-TATTTCATGAA-TTCTTTGATTACTCATTTTATTAACTAAATGCTTGTACAGGAG 147350 Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| ||||| || || | |||||||| || |||| || ||||| || || || Sbjct 147349 ACAAGCAAAGTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTTGAGAAGGTGAG 147290 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || ||||| | || |||||| ||||||||||| ||| ||| ||||| ||||| || Sbjct 147289 TCCAGGCATCAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAACCAGAAAAGAA 147230 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 || |||||||| || ||||| || ||||| || ||| || | | | ||| | | | Sbjct 147229 GATGCCTTCAACAGCAGCAAAGGCAATCAATCTCTCAGCAAATGAATCATTCTCATT--- 147173 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGT 13388 |||||| || | ||||| |||| || | || || ||| || ||| || ||||| | Sbjct 147172 TATCCATTTCATAGCCCACATTGCCTTCTTTTGAATAACAGG-CACATTGTCAATTGCAT 147114 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 | | ||| || ||||| || || || ||||| |||||||| | ||| Sbjct 147113 GTAGAAGATAGTTCTTTTCATTTTCATCGGTTATGTAAGTGTCTATCAAAAGAGAATAAG 147054 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||||||||| ||||||||||| ||||||| || |||||||| ||||| || || | | Sbjct 147053 TTTCTGAATGTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATCTGGCTTCAGGCA 146994 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 | | |||||| | | || || || |||||||| || || || || ||||| || | Sbjct 146993 CTTAAACTTCTGTACAGAACTATTAGGCCAAGTTTTCATTCACAATACCATCACTGGCTG 146934 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAAT 13628 ||||||| || || | | ||||||||| | ||||| | ||| | |||| ||||| Sbjct 146933 CAAAAAAGGCTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAAGCTTTTCCCAAT 146874 Query 13629 CTGGAAAATC 13638 || || ||| Sbjct 146873 CTTTAAGATC 146864 >seq613 Length=410769 Score = 241 bits (266), Expect = 1e-58 Identities = 510/753 (68%), Gaps = 15/753 (2%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| || || | ||||||| |||| || || || ||||| |||| ||| || || | Sbjct 197327 TTTTTGGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCAT 197386 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA----CACCCTAATTCTA 12974 ||||| | || |||||||| || ||| | ||| | ||| | ||| ||| | | Sbjct 197387 ATCCATCCATTCAAAAGGATTCTTTGAA---TTGTAGATCTTAGGAGCTCCC-AATGCAA 197442 Query 12975 GTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTA 13034 || |||||| || ||||| || || || || | |||||| |||| | |||||||| | Sbjct 197443 ATATCAATCTATCTGCAACGAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAA 197502 Query 13035 TTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAA 13094 ||| || || || | |||||| | | || | |||||| || ||||| || || Sbjct 197503 TTAGTTCAACTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAACAGCAGAAGAAA 197562 Query 13095 CTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT-AGATGCTTAAACATCATACAT 13153 || || | | |||| || | | || || | ||| || | | | ||| Sbjct 197563 TGATTTCATGAACT-CGTTGAATACTCAACTTATTAATCATATGTTTGTAAAGAAGACAA 197621 Query 13154 GCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCC 13213 ||||| || || | ||||||||||| |||| || |||||||| || || || Sbjct 197622 GCAAAGTCTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCT 197681 Query 13214 GGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATT 13273 ||||| | || |||||| ||||||||||||||| ||| ||||| ||||| || || Sbjct 197682 GGCATCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATG 197741 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 |||||||| || ||||| || ||||| |||||| || | | | ||| ||| | ||| Sbjct 197742 CCTTCAACAGCAGCAAAGGCAATCAATCTTTCAGCAAATGAATCATTATTA---TTAATC 197798 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAA-CGCAGTTCATATTTTCTATTGCGTTAAA 13392 || || | ||||| ||||||| | || || ||| || ||| || || || | | Sbjct 197799 CATTTCATTGCCCACATTGCTTTCTTTTGAATAACAG-GCACATTATCAATGGCATGGAG 197857 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 | ||| || || || || || ||||| ||||| ||||| | ||| |||| Sbjct 197858 AAGATAGTTCTTCTCATTTTCATCGGTTATATAGGTATCAATCAAAAGTGAATAGGTTTC 197917 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 ||| ||||| || ||||| ||||||| || ||||| || ||||| || || | || || Sbjct 197918 TGAGTGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAACTTG 197977 Query 13513 AACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 ||||| | | || || || |||||||| || || || || ||||| || ||||| Sbjct 197978 CACTTCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGCAAA 198037 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttC 13605 || ||||||| | |||||||| | ||||| Sbjct 198038 GAAGGCAAGTACATATTTAATAAAGTGCTTTTC 198070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978738939194