Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq697 300 2e-76 seq613 259 5e-64 >seq697 Length=319182 Score = 300 bits (332), Expect = 2e-76 Identities = 573/841 (68%), Gaps = 13/841 (2%) Strand=Plus/Minus Query 21120 TATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTC 21179 || ||| | | || || ||||| | | || || ||||||| |||||| ||| | || Sbjct 147704 TAATTAATCAGAAGTCTGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATGACTC 147645 Query 21180 CCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATA 21239 | ||||||||| || | |||||| ||||||| ||||| || || |||| ||| |||| Sbjct 147644 CAGCTTTTTGATAGTCTCCCACTCTTCTTTCGAAGAAATTGGTTTTACCTTACAAAGATA 147585 Query 21240 TAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTG 21299 | ||||| | ||||| ||||| | || || | || || | ||||| | | Sbjct 147584 TCATATCCATCCACTCAAAAGGATTCTTCGAATTGTAAATCTTGGGAGCACCCAATGCAA 147525 Query 21300 ATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGA 21359 ||| |||||||||||||||||||| ||||||| ||| || | ||||||| || | Sbjct 147524 ATATCAATCTATCTGCTACAAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAA 147465 Query 21360 TCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAA 21419 | | || || || ||||||| | | || |||||| || || || | | | Sbjct 147464 TAAGTTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTCAACAGC--CGATGA 147407 Query 21420 TTATATTT-ATTA--TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAAC 21476 | ||||| || | || | ||| |||| || | ||| || || ||| | || Sbjct 147406 TATTATTTCATGAATTCTTTGAT-TACTCATTTTATTAACTAAATGCTTGTACAGGAGAC 147348 Query 21477 ATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAAC 21536 | ||||| || ||| | |||||||||||| ||||||||||| || || || | | Sbjct 147347 AAGCAAAGTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTTGAGAAGGTGAGTC 147288 Query 21537 CGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAA 21596 | ||||| ||| ||| ||||| | ||||||||| | ||||| || |||||||| | Sbjct 147287 CAGGCATCAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAACCAGAAAAGAAGA 147228 Query 21597 TGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATA 21656 |||| ||||| |||||||| |||| |||| ||| | || || || || || || Sbjct 147227 TGCCTTCAACAGCAGCAAAGGCAATCAATCTCTCAGCAAAT---GAATCATTCTCATTTA 147171 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAAT-ACAATCA-ATTGTATCAATAGCTTT 21714 ||||||| ||||| ||||||| | || ||| ||| || |||| ||||| || | Sbjct 147170 TCCATTTCATAGCCCACATTGCCTTCTTTTGAATAACAGGCACATTG--TCAATTGCATG 147113 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||||| || ||||||| | ||||||||||| | ||| | Sbjct 147112 TAGAAGATAGTTCTTTTCATTTTCATCGGTTATGTAAGTGTCTATCAAAAGAGAATAAGT 147053 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 ||| |||||||||||||| || ||||| | |||||| ||||| ||||| || || | Sbjct 147052 TTCTGAATGTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATCTGGCTTCAGGCAC 146993 Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 || ||| || | | | || || |||||||||||||| || || ||||||||||| || Sbjct 146992 TTAAACTTCTGTACAGAACTATTAGGCCAAGTTTTCATTCACAATACCATCACTGGCTGC 146933 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATC 21954 |||||| || | | || || ||||||| ||| | | |||| | |||| |||||| Sbjct 146932 AAAAAAGGCTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAAGCTTTTCCCAATC 146873 Query 21955 T 21955 | Sbjct 146872 T 146872 >seq613 Length=410769 Score = 259 bits (286), Expect = 5e-64 Identities = 637/968 (66%), Gaps = 38/968 (4%) Strand=Plus/Plus Query 21129 AAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTT 21188 |||| || ||||| | | || || ||||||| |||||| ||||| ||| ||||| Sbjct 197272 AAAAGTCTGCATCCATAGTAAATACTTTATCTTATTTTTTGCTCATAACTCCAGCTTTTT 197331 Query 21189 GATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCA 21248 | || || | ||||||| ||||||| ||||| || || |||| || ||||| |||| Sbjct 197332 GGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCATATCCA 197391 Query 21249 TAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATC 21308 | | ||||| ||||| | || || | || ||| | |||| | | ||| |||| Sbjct 197392 TCCATTCAAAAGGATTCTTTGAATTGTAGATCTTAGGAGCTCCCAATGCAAATATCAATC 197451 Query 21309 TATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTA 21368 ||||||| || ||||| ||||||| ||| || | ||||||| || || | || | Sbjct 197452 TATCTGCAACGAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATTAGTTCAA 197511 Query 21369 CAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTA 21428 | || | ||||| | | || |||||| || || || | ||| || || | Sbjct 197512 CTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAACAGCAGAAGAAATGAT-TTCA 197570 Query 21429 TTATCCTAGATG--TACTAGGGGGATACAATAAT-TGTTTAAACATCAAACATGCAAAAT 21485 | | | | | || |||| || ||| || ||||| | | | ||| ||||| | Sbjct 197571 TGAAC-TCGTTGAATACTCAACTTATT-AATCATATGTTTGTAAAGAAGACAAGCAAAGT 197628 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 | ||| | ||||||||| || ||||||||||| ||||| || | || ||||| | Sbjct 197629 CTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGCATCA 197688 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605 || ||| ||||| | ||||||||| | ||||| || |||||||| ||||| |||| Sbjct 197689 ATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCTTCAA 197748 Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665 | |||||||| |||| |||| |||| | || || || |||| |||||||| Sbjct 197749 CAGCAGCAAAGGCAATCAATCTTTCAGCAAAT---GAATCATTATTATTAATCCATTTCA 197805 Query 21666 CTGCCCATTTTGCCTTTTCTTTAAT-ACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724 |||||| |||| || | || ||| ||| || | ||||||| || | | ||||| Sbjct 197806 TTGCCCACATTGCTTTCTTTTGAATAACAGGCACAT-TATCAATGGCATGGAGAAGATAG 197864 Query 21725 tttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGT 21784 || || |||| | |||||||||| ||| |||| || || Sbjct 197865 TTCTTCTCATTTTCATCGGTTATATAGGTATCAATCAAAAGTGAATAGGTTTCTGAGTGA 197924 Query 21785 ATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCG 21844 || || || || ||||| | |||||| || || |||||||| || | | ||| || || Sbjct 197925 ATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAACTTGCACTTCT 197984 Query 21845 GAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCC 21904 | | | || ||| |||||||||||||| || || |||||||| || ||||| || || Sbjct 197985 GTACAGAACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGCAAAGAAGGCA 198044 Query 21905 AATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCT--------- 21955 | || || ||| ||||| | ||| | | || | ||||| ||||||| Sbjct 198045 AGTACATATTTAATAAAGTGCTTTTCATCGGCAGTGAGTTTTTCCCAATCTTTAAGATCC 198104 Query 21956 ------------AATAAAT------CTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 | ||||| | | ||||||||| |||||||| |||||| || Sbjct 198105 TAAAATTTATTAATTAAATAGAATACCTAATATAAATCTATTTCTTCAGCTGTCCAGAAA 198164 Query 21998 CTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057 || || | | ||||||||| ||||||| ||||| ||| |||| || || | |||| Sbjct 198165 CTTGCTTTGTGTTACTTATACATATTCCAGATGTCATTGTATTTTATGGGGAAGAGTACA 198224 Query 22058 AACCTGTT 22065 || || || Sbjct 198225 AATCTATT 198232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531896165814280