Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq613 253 5e-62 seq697 239 1e-57 >seq613 Length=410769 Score = 253 bits (280), Expect = 5e-62 Identities = 370/520 (71%), Gaps = 5/520 (1%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAA 22491 ||| | || || ||| ||||| |||||||||| || ||| | |||||| || ||| Sbjct 197830 ATTCAAAAGAAAGCAATGTGGGCAATGAAATGGATTAATAATAATGATTCATTTGCTGAA 197771 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 | | ||||| ||||||| ||||||||||| ||||||||||| |||||||||| || Sbjct 197770 AGATTGATTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCTATA 197711 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||| | |||||| | || | ||||| || || || ||||||||||| |||||| Sbjct 197710 TTTTGGATCAAAAAAAGATCATTGATGCCAGGACTCACCTTTTCAAATGAATTAATTTCA 197651 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 ||||||| ||||| ||||| || ||||| ||| | || || || ||||| ||| || Sbjct 197650 AGAGATGAAGGTCTCCATACAGACTTTGCTTGTCTTCTTTA---CAAACATATGATTAAT 197594 Query 22672 AAACTTCCATATGAAAC-TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCT 22730 || || ||| ||| || | ||| || ||| | ||| |||||| ||||| Sbjct 197593 -AAGTTGAGTATTCAACGAGTTCATGAAATCATTTCTTCTGCTGTTGAAATTGAAAAAGA 197535 Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTAC 22790 ||| || | || || |||||||| || ||||| || ||| || | | |||| Sbjct 197534 ATTCATCAGTGAAGCTTTACCAGTTGAACTAATTGGAATGAATTCCAATTTGATGAAATA 197475 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAA 22850 ||||||| |||| ||||||||| | | || || || | || | | ||| || || Sbjct 197474 ATATATTGAATTCGTTGCAGATAGATTGATATTTGCATTGGGAGCTCCTAAGATCTACAA 197415 Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 ||||| |||||||||||||| | || || | |||| || || |||||||| Sbjct 197414 TTCAAAGAATCCTTTTGAATGGATGGATATGATATCCTTATAAGGTAAAACTAATTTCTT 197355 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||||| ||||||||| || ||||||||||| || |||||| Sbjct 197354 CGAAAGAAGAGTTGGAGACTACCAAAAAGCTGGAGTTATG 197315 >seq697 Length=319182 Score = 239 bits (264), Expect = 1e-57 Identities = 537/792 (68%), Gaps = 21/792 (3%) Strand=Plus/Plus Query 22168 GATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTTT 22227 |||||| ||| ||||||| | ||| | |||||||| || ||| | ||||| || ||| Sbjct 146873 GATTGGGAAAAGCTTACAGCTGATGAAAAGCATTTTATTAAGTATGTCCTAGCCTTTTTT 146932 Query 22228 GCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAAT---TTTGCATCTGAAATT 22284 || || || ||||| || ||| || || | | ||||| | || | | ||| || Sbjct 146933 GCAGCCAGTGATGGTATTGTGAATGAAAA-CTTG-GCCTAATAGTTCTGTA-CAGAAGTT 146989 Query 22285 CAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCG 22344 || || || |||||||| || ||||| | |||| || |||||| | || | Sbjct 146990 TAAGTGCCTGAAGCCAGATGCTTTTATGGATTTTAAATAGCAATGGAAAATATACATTCA 147049 Query 22345 GAAACATATTCTATGATGCTACAGTCACTCGTAGAA--GATAAAGACGAACAACGAAACT 22402 ||||| |||||| | || || | |||| | || ||| || | ||| | ||| Sbjct 147050 GAAACTTATTCTCTTTTGATAGA--CACTTACATAACCGATGAAAATGAAAA--GAACTA 147105 Query 22403 TATTCCGC--GCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAA 22460 | ||| | || ||| || | | ||| | || |||||| ||||| |||| Sbjct 147106 TCTTCTACATGCAATTGACAATGTGCCTGTTATTCAAAAGAAGGCAATGTGGGCTATGAA 147165 Query 22461 ATGGATGAACAATGAACG-TTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAG 22519 |||||| || | ||| | |||||| || || | | ||||| ||||||| ||||||| Sbjct 147166 ATGGATAAATGA-GAATGATTCATTTGCTGAGAGATTGATTGCCTTTGCTGCTGTTGAAG 147224 Query 22520 GCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGC 22579 |||| ||||||||||| |||||||||| || |||||| | |||||| | || | |||| Sbjct 147225 GCATCTTCTTTTCTGGTTCATTTTGTGCCATATTTTGGATCAAAAAAAGATCATTGATGC 147284 Query 22580 CGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTG 22639 | || || || || |||||||| |||||| | ||||| ||||| ||||| || |||| Sbjct 147285 CTGGACTCACCTTCTCAAATGAATTAATTTCAAGGGATGAAGGTCTCCATACAGACTTTG 147344 Query 22640 CGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATA 22699 | ||| | || || || ||| | || ||||| | || ||| | | ||| | Sbjct 147345 CTTGTCTCCTGTA---CAAGCATTTAGTTAATAAAATGAGTAATCAAAGAATTCATGAAA 147401 Query 22700 TTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTC 22759 | || || || |||||| ||||| ||| ||| | || || ||||||| | Sbjct 147402 TAATATCATCGGCTGTTGAAATTGAAAAAGAATTCATTAGTGAAGCTCTACCAGTTGAAC 147461 Query 22760 TCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTAT 22819 | ||||| || ||| || | | |||| ||||||| ||||||| |||||| | | Sbjct 147462 TTATTGGAATGAATTCCAATTTGATGAAATAATATATTGAATTTGTAGCAGATAGATTGA 147521 Query 22820 TAATTTCACTCGGTTATGCAAAGCATTATAACGTCG-TTAATCCATTTGAATGGATGGAA 22878 || || || | ||| | | ||| ||| || ||| ||||| ||||| |||||||| Sbjct 147522 TATTTGCATTGGGTGCTCCCAAGATTTACAA-TTCGAAGAATCCTTTTGAGTGGATGGAT 147580 Query 22879 CTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAA 22938 | || || | |||| || |||||||||||||||| |||||| || || || |||||| Sbjct 147581 ATGATATCTTTGTAAGGTAAAACCAATTTCTTCGAAAGAAGAGTGGGAGACTATCAAAAA 147640 Query 22939 GCAGGTGTTATG 22950 || || || ||| Sbjct 147641 GCTGGAGTCATG 147652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303341960645054