Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq70 91.5 1e-13 seq386 87.8 1e-12 seq60 87.8 1e-12 seq502 86.0 4e-12 seq99 86.0 4e-12 >seq70 Length=215836 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | |||||| || || ||||| ||||||| ||| || || | Sbjct 1115 CATT-CCACCTCTCAATCTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGT 1173 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 1174 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 1233 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 1234 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 1293 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || | |||||||| || || ||||| || || ||||| || | ||| || Sbjct 1294 CAACATCAAGAGTAATAGTCTTTCCAGTCAAAGTCTTAACGAAAATTTACATTTT 1348 >seq386 Length=4266 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 38082 CAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTG 38141 ||||| | ||||||||||| | ||| || || || |||||| ||||||| || || Sbjct 3047 CAATCTTAGCCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTA 2988 Query 38142 TAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 ||||| || | | | | || ||||||| ||||| ||||| || || | || || | Sbjct 2987 TAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAA 2928 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 || | |||| ||||| ||||| |||||| ||| ||| | | ||| ||| Sbjct 2927 TCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGAT 2868 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 2867 GGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 2812 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 405 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 347 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 346 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 287 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 286 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 227 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 226 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTTACGAAAATTTACAT 175 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 1898 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 1840 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 1839 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 1780 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 1779 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 1720 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 1719 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 1668 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 2586 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 2528 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 2527 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 2468 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 2467 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 2408 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 2407 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 2356 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 2814 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 2756 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 2755 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 2696 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 2695 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 2636 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 2635 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 2584 >seq60 Length=234462 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || |||||||| ||||||| || || |||| Sbjct 129095 CATT-CCACCTCTCAATCTCAAGACTAAGTGAAGAGTTGATTCCTTTTAGATGTTATAAT 129153 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | | | | || |||||||| ||||| || || || || | || || ||| | Sbjct 129154 CTTAAAGTGTTCTTCCATCCTCTAATTGCTTTCCTGCGAAAATGAGTCTTTATTAATCAG 129213 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCC--AC 38262 |||| ||||| |||| | ||| |||| || || ||| | | ||||||| | || Sbjct 129214 GTGGGATTCCTTCCTTGT-CTTAAATTTTAGCTTTGACAGCATCAATAGTATCTTCTGAC 129272 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || | ||||||||||| || || | |||||| || || || || || Sbjct 129273 TTT--ACATCGAGAGTAATAGTTTTTCCGGTTAGGGTTTTTACAAAAATTTGAAT 129325 >seq502 Length=458689 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 101316 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 101258 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 101257 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 101198 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 101197 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 101138 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 101137 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTTACGAAAATTTACAT 101086 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 102462 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 102404 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 102403 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 102344 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 102343 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 102284 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 102283 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 102232 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 102690 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 102632 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 102631 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 102572 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 102571 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 102512 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 102511 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 102460 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 102918 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 102860 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 102859 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 102800 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 102799 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 102740 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 102739 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTTACGAAAATTTACAT 102688 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 103146 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 103088 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 103087 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 103028 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 103027 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 102968 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| || || ||||| || | ||| Sbjct 102967 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 102916 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 103374 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 103316 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 103315 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 103256 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| |||||| ||| ||| | | ||| ||| || Sbjct 103255 GTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 103196 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || ||||| | || ||||| || | ||| Sbjct 103195 CAACATCAAGAGTGATGGTTTTTCCAGTCAAAGACTTAACGAAAATTTACAT 103144 >seq99 Length=47800 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| | ||| || || || |||||| ||||||| || || |||| Sbjct 7406 CATT-CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAAT 7348 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || ||||||| ||||| ||||| || || | || || ||| | Sbjct 7347 CTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAG 7288 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || || |||||| ||| ||| | | ||| ||| || Sbjct 7287 GTGGGATTCCTTCCTTATCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTT 7228 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || ||||| || || || ||||| || ||||| ||||| Sbjct 7227 CAACATCAAGAGTGATGGTTTTTCCAGTTAATGTTTTTACAAATATTTGCAT 7176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944354728207