Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq697 255 7e-63 >seq697 Length=319182 Score = 255 bits (282), Expect = 7e-63 Identities = 572/847 (68%), Gaps = 38/847 (4%) Strand=Plus/Minus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCAC 92800 || |||| |||||||| | |||||||| || || | || ||| |||| || ||| Sbjct 147698 ATCAGAAGTCTGCATCCATAGTAAATACTTTATCTTAT---TTTTTACTCATGACTCCAG 147642 Query 92801 ATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 |||||| || || || ||| || |||| |||||||| || || |||| |||||||||| Sbjct 147641 CTTTTTGATAGTCTCCCACTCTTCTTTCGAAGAAATTGGTTTTACCTTACAAAGATATCA 147582 Query 92861 AATTCA-CTAGTGATT-GGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACA 92918 || || | | | | |||||||| | || ||| ||| | | ||| | | | Sbjct 147581 TATCCATCCACTCAAAAGGATTCTTCGAATTGTAAATCTTGGGAGCACCCAATGCAAATA 147522 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 |||||||| ||||||||||| || || | |||||||| |||||||||| | || Sbjct 147521 TCAATCTATCTGCTACAAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATAA 147462 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGC--------TTC 93030 | || |||||||| || | | ||| ||||| || ||| |||| || || Sbjct 147461 GTTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTCAACAGCCGATGATATTA 147402 Query 93031 TTTCAAGATTTCT---ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACAT 93087 ||||| || |||| ||||||| || ||| | || | || ||||||| Sbjct 147401 TTTCATGAATTCTTTGATTACTC----AT-------TTTATTAACTAAATGCTTGTACAG 147353 Query 93088 TAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGT 93147 | || |||||||| ||||| | |||||| || | ||| || || ||||| ||| || Sbjct 147352 GAGACAAGCAAAGTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTTGAGAAGGT 147293 Query 93148 TAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaa 93207 | || || | || | || ||| |||| ||||||||| | | ||| ||||||||| Sbjct 147292 GAGTCCAGGCATCAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAACCAGAAAA 147233 Query 93208 aaaTATACCTTCCACGGCTGCAAATGCCA-CAATACGTTCGGCAAAATTTGCGGAATTAC 93266 || || ||||| || || ||||| || | |||| | || ||||| || ||| Sbjct 147232 GAAGATGCCTTCAACAGCAGCAAAGGCAATCAAT-CTCTCAGCAAA---TGAATCATTCT 147177 Query 93267 TGCTGATCCATTTTAAAGCCCA-ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | |||||||| | |||||| || | ||| ||| | |||| ||| | | || || Sbjct 147176 CATTTATCCATTTCATAGCCCACATTGCCTTCTTT-TGAATAACAGGCACATTGTCAATT 147118 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || | | || || | || | ||| |||||| || || || || |||||| Sbjct 147117 GCATGTAGAAGATAGTTCTTTTCATTTTCATCGGTTATGTAAGTGTCTATCAAAAGAGAA 147058 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 || |||| ||||| | ||| |||||||| |||| ||||| || || ||||| ||||| Sbjct 147057 TAAGTTTCTGAATGTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATCTGGCTTCA 146998 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTA--CGAGATTTTCATTGACTATACCATCGG 93503 | | | |||||| | | || || | || | | |||||||| || |||||||| Sbjct 146997 GGCACTTAAACTTCTGTACAGAA-CTAT-TAGGCCAAGTTTTCATTCACAATACCATCAC 146940 Query 93504 ATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTAT 93563 ||||||||||| || | | || ||| |||||||| || |||||| || ||||||| | Sbjct 146939 TGGCTGCAAAAAAGGCTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAAGCTTTT 146880 Query 93564 CCCAATC 93570 ||||||| Sbjct 146879 CCCAATC 146873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855948350280