Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq71 116 3e-21 seq60 113 4e-20 seq36 100 2e-16 seq114 93.3 4e-14 seq70 93.3 4e-14 seq247 84.2 2e-11 >seq71 Length=215326 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| ||||||| || || || | || || ||||| |||||||||| || ||| | | Sbjct 119897 ATGTAAATTTTCGTAAAGACACTCACAGGAAAAACAATCACTCTTGATGTTGAACCATCT 119838 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | |||| ||||| ||||||||||| || || ||||||||| || Sbjct 119837 GACACAATTGATGCTGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCCGATTAA 119778 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || || || ||| | ||||| || | || | || || || ||| Sbjct 119777 CAAAGACTTATCTTCGCTGGTAAATAATTAGAAGACGGAAGAACACTTTCAGACTATAAC 119718 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||| |||||||| | || ||||| || ||||| | ||||| Sbjct 119717 ATTTAAAAGGAATCCACTCTTCACTTAGTCTTAAGATTGAGAGGAGG 119671 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| || || || || | || || || || |||||||||| || ||| | | Sbjct 119439 ATGTAAATCTTCGTCAAGACACTCACAGGAAAGACTATCACTCTTGATGTTGAACCATCT 119380 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | |||| ||||| ||||||||||| || || || || ||| || Sbjct 119379 GACACAATTGATGCTGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCCCCTGATTAA 119320 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || || | ||||| ||| | || | || || || ||| Sbjct 119319 TAAAGACTTATCTTTGCTGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 119260 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| |||| ||||| ||| | || || || ||| ||||| | ||||| Sbjct 119259 ATTTAAAAGGAATCAACCCTTCACTTGGTCTTGAGATTGAGAGGAGG 119213 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||| || || || || | || || || || |||||||||| || ||| | | Sbjct 119669 ATGTAAATCTTCGTCAAGACACTCACTGGAAAGACCATCACTCTTGATGTTGAACCATCT 119610 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | | || || || ||||||||||| || || || |||||| || Sbjct 119609 GACACCATTGATGCTGTTAAGGCTAAGATCCAAGACAAGGAAGGAATCCCCCCCGATTAA 119550 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || || ||| | ||||| || | || |||| ||||| ||| Sbjct 119549 TAAAGACTTATCTTCGCTGGTAAATAATTAGAAGACGGAAGAACACTCTCAGATTATAAC 119490 Query 22399 ATTC--AAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | || || | ||||| ||| | || || ||||| |||| | ||||| Sbjct 119489 AATCTAAAGAGGAATCAACCCTTCACTTGGTTTTAAGATTAAGAGGAGG 119441 >seq60 Length=234462 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 22209 ATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGT 22268 ||| | || ||| ||||||||||| ||||| ||||||| ||||| | ||||| || || Sbjct 129335 ATTAGAAATGATTCAAATTTTTGTAAAAACCCTAACCGGAAAAACTATTACTCTCGATGT 129276 Query 22269 GGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328 | | ||||| | || | | ||||| |||||| |||||||||| || || || Sbjct 129275 AAAGTCAGAAGATACTATTGATGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCC 129216 Query 22329 ACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 ||| ||| || || | || || || || || || || ||||||||| | || | | Sbjct 129215 ACCTGATTAATAAAGACTCATTTTCGCAGGAAAGCAATTAGAGGATGGAAGAACACTTTA 129156 Query 22389 CGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| |||| ||||| || | || ||||| ||| ||||| | || || Sbjct 129155 AGATTATAACATCTAAAAGGAATCAACTCTTCACTTAGTCTTGAGATTGAGAGGTGG 129099 >seq36 Length=667686 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||| |||||||||||||||| | || || || || |||| ||||| ||||| | | Sbjct 163639 ATGTAAATTTTTGTTAAAACCCTTACGGGAAAGACTATCACACTTGATGTGGAGCCTTCA 163580 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | |||| || ||| |||| || || || |||||||| |||||| Sbjct 163579 GACACCATTGATGCTGTCAAGGCTAAGATTTAAGATAAAGAAGGAATTCCACCTGATCAA 163520 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || || | || || | || | || ||||| || Sbjct 163519 TAAAGATTGATTTTTGCAGGAAAGCAACTTGAAGACGGAAGAACTCTTTCAGATTATAAT 163460 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||| |||||||||| || | || ||||||||| |||| Sbjct 163459 ATTTAAAAAGAATCTACTCTCCACTTAGTTTTGAGATT 163422 >seq114 Length=584889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||| ||||||||||||| || | || || || || |||| || || || || | Sbjct 475321 AATATGTAAATTTTTGTTAAGACCCTCACGGGCAAGACCATCACACTCGATGTCGAGCCA 475380 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || | | | || ||| || ||||||| || || || || |||||| Sbjct 475381 TCTGATACTATCGATGCTGTTAAGGCAAAGATCTAAGACAAAGAAGGAATCCCTCCCGAT 475440 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | | || ||||| || || || || |||||| | || | |||||||| Sbjct 475441 TAATAAAGATTGATTTTTGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCCGATTAT 475500 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||| ||||| || | |||||||| ||| || | | |||||| Sbjct 475501 AACATCTAAAAGGAATCAACTCTCCATTTAGTATTGAGACTCAGAGGAGGT 475551 >seq70 Length=215836 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||| |||| ||||||||||||||||| || || || | |||||||| || ||| | Sbjct 146 AAAATGTAAATATTTGTTAAAACTTTAACAGGAAAGACTATTACTCTTGATGTTGAACCA 87 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | |||| | |||| |||||| |||||||||| || || ||||| ||| Sbjct 86 TCAGACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGAT 27 Query 22336 CAACAACGTCTTATATTTGCCGGCAA 22361 || || | || || ||||| || || Sbjct 26 TAATAAAGACTCATTTTTGCAGGAAA 1 >seq247 Length=527326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 168/248 (68%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAA--AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCA 22258 ||||| | |||| || | ||| ||||||||||||| || | || ||||| || ||| Sbjct 405823 TTTTAAAAATTTAAAATAATATGTAAATTTTTGTTAAGACCCTCACGGGTAAGACCATCA 405882 Query 22259 CTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGG 22318 | || || || || | | || || | || | | | || ||| || | ||||||| Sbjct 405883 CACTCGATGTTGAGCCATCTGACACTATCGATGCTGTTAAGGCAAAGATCTAGGACAAGG 405942 Query 22319 AGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACC 22378 | || || || ||||||||| || | | || || || || || || || || ||| Sbjct 405943 AAGGAATCCCTCCCGATCAATAAAGATTAATTTTCGCTGGAAAGCAATTGGAAGATGGAA 406002 Query 22379 GCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGC 22438 | || | || ||||| ||||| ||||| ||||| || | ||||| || ||| || | Sbjct 406003 GAACTCTTTCAGATTATAACATCCAAAAGGAATCAACTCTCCATTTGGTATTGAGACTCA 406062 Query 22439 GCGGAGGT 22446 | |||||| Sbjct 406063 GAGGAGGT 406070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724434541805