Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq680 89.7 5e-13 seq502 84.2 2e-11 seq386 82.4 8e-11 seq36 82.4 8e-11 >seq680 Length=357438 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || |||||||||| ||| || ||||||| | || | Sbjct 173429 AATCTCAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAAAGTGTTCTT 173488 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 |||||||||| ||||| || || |||| | | | | || ||||||||||||||| Sbjct 173489 CCGTCTTCAAGTTGCTTTCCTGCGAAAATCAATCTTTATTAATCAGGAGGAATTCCTTCT 173548 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || |||| || || ||| || | || | ||| || | || || || | ||| Sbjct 173549 TTATCTTAAATCTTGGCCTTGACTGCATCAATTGTGTCTGATGGCTCAACATCAAGAGTG 173608 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTA 64447 | |||||| || || | ||||| || ||||||| ||| ||| Sbjct 173609 ATGGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACATATTA 173650 >seq502 Length=458689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | |||| || | || ||||| |||| ||||| ||||||| Sbjct 101312 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATCTGAA 101253 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| | | ||| || ||| ||||||| | | | || || || Sbjct 101252 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 101193 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || |||| ||||| ||| ||| | || | || || | || || Sbjct 101192 ATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACA 101133 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || | ||| | ||| || || |||||||| ||||||||||||| ||||| Sbjct 101132 TCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTTACGAAAATTTACATTT 101084 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 64225 CAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCG 64284 |||||| | |||| || | || ||||| |||| ||||| ||||||| | || | Sbjct 101991 CAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATCTGAAAGTGTTCT 101932 Query 64285 CGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTC 64344 | ||||| | | ||| || ||| ||||||| | | | || || || |||||||| Sbjct 101931 TCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTC 101872 Query 64345 TTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || |||| ||||| ||| ||| | || | || || | || || || | ||| Sbjct 101871 CTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGT 101812 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || || |||||||| ||||||||||||| |||| Sbjct 101811 GATGGTTTTTCCAGTCAAAGTCTTTACGAAAATTTACATT 101772 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | |||| || | || ||||| |||| ||||| ||||||| Sbjct 102914 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATCTGAA 102855 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| | | ||| || ||| ||||||| | | | || || || Sbjct 102854 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 102795 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || |||| ||||| ||| ||| | || | || || | || || Sbjct 102794 ATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACA 102735 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | ||| || || |||||||| ||||||||||||| |||| Sbjct 102734 TCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTTACGAAAATTTACATT 102687 >seq386 Length=4266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| | |||| || | || ||||| |||| ||||| ||||||| Sbjct 401 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATCTGAA 342 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| | | ||| || ||| ||||||| | | | || || || Sbjct 341 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 282 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || |||| ||||| ||| ||| | || | || || | || || Sbjct 281 ATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACA 222 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | ||| || || |||||||| ||||||||||||| |||| Sbjct 221 TCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTTACGAAAATTTACATT 174 >seq36 Length=667686 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| || | || |||||||||| ||| || ||||||| | || | Sbjct 163422 AATCTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATCTGAAAGAGTTCTT 163481 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 |||||||||| ||||| || ||| |||| | | | || || || |||||||||||| Sbjct 163482 CCGTCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGTGGAATTCCTTCT 163541 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || |||| || || ||| ||| | || | || || | ||||| || | || Sbjct 163542 TTATCTTAAATCTTAGCCTTGACAGCATCAATGGTGTCTGAAGGCTCCACATCAAGTGTG 163601 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| || || | ||||| || ||||||| ||| Sbjct 163602 ATAGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 163639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499640446844680