Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq60 129 5e-25 seq114 125 6e-24 seq680 118 1e-21 seq247 113 4e-20 seq36 113 4e-20 seq99 104 2e-17 seq70 86.0 6e-12 >seq60 Length=234462 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || ||||||||||||| ||| |||||||| | ||| | | Sbjct 129111 CTCAAGACTAAGTGAAGAGTTGATTCCTTTTAGATGTTATAATCTTAAAGTGTTCTTCCA 129170 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| ||||||||| | || | || || | || || || || ||||| || Sbjct 129171 TCCTCTAATTGCTTTCCTGCGAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 129230 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| ||||| || || | || || |||| || |||||||||| Sbjct 129231 TCTTAAATTTTAGCTTTGACAGCATCAATAGTATCTTCTGACTTTACATCGAGAGTAATA 129290 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| |||||||| ||||||||||||||||| ||| Sbjct 129291 GTTTTTCCGGTTAGGGTTTTTACAAAAATTTGAATC 129326 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || | || |||||||||||||| |||||||| | | ||| | | Sbjct 128883 CTCAATACTAAGTGAATTGTGGATTCCTTTTGGATGTTATAATCTCCAAGTGTTCTTCCA 128942 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| ||||||||| | || | || || | || || || || ||||| || Sbjct 128943 TCTTCTAATTATTTTCCTGCAAAAATTAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 129002 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || |||||| ||| ||| || | || | | | ||| || || ||||||| Sbjct 129003 TCCTGGATTTTTGATTTAATCATATCAATTGTTTAGTCTGGCTCAACATCAAGAGTAATT 129062 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| | ||||||||||||| ||| Sbjct 129063 GTCTTTCCACTAAGATTCTTTACAAAAATTTACAT 129097 >seq114 Length=584889 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| ||||| |||| ||| || ||||||||||||| ||| ||||||||| Sbjct 475550 CCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCCTTTTAGATGTTATAATCGGAA 475491 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||| ||||| || | ||||||| || | || || || Sbjct 475490 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCGGGAGGG 475431 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| |||| || ||| || | || || | || || || | |||||| Sbjct 475430 ATTCCTTCTTTGTCTTAGATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCGACA 475371 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || || || |||||||||| ||| Sbjct 475370 TCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTAACAAAAATTTACAT 475324 >seq680 Length=357438 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| || |||||||| |||| ||||||||||| | ||| | Sbjct 173432 CTCAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAAAGTGTTCTTCCG 173491 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| ||||||||| | ||||||| || | || || ||||| ||||||||| Sbjct 173492 TCTTCAAGTTGCTTTCCTGCGAAAATCAATCTTTATTAATCAGGAGGAATTCCTTCTTTA 173551 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| ||| || |||| || || | ||||| || | ||| || || ||||| | Sbjct 173552 TCTTAAATCTTGGCCTTGACTGCATCAATTGTGTCTGATGGCTCAACATCAAGAGTGATG 173611 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| |||||||||| ||| Sbjct 173612 GTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 173646 >seq247 Length=527326 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| ||||| || | ||| || ||||||||||||||||| |||||||| Sbjct 406069 CCTCCTCTGAGTCTCAATACCAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCTGAA 406010 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||||||| ||||| ||| | || |||| || || || || || Sbjct 406009 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCGAAAATTAATCTTTATTGATCGGGAGGG 405950 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || | || ||| || | || || | ||||| || | ||| || Sbjct 405949 ATTCCTTCCTTGTCCTAGATCTTTGCCTTAACAGCATCGATAGTGTCAGATGGCTCAACA 405890 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || || || || || || |||||||||| ||| Sbjct 405889 TCGAGTGTGATGGTCTTACCCGTGAGGGTCTTAACAAAAATTTACAT 405843 >seq36 Length=667686 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || || ||||| |||| ||||||||||| | ||| | Sbjct 163425 CTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATCTGAAAGAGTTCTTCCG 163484 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || | ||| |||||||| | ||||||| || || || || ||||| ||||||||| Sbjct 163485 TCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGTGGAATTCCTTCTTTA 163544 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| ||| || |||| || || | |||||| |||| ||| || || || || | Sbjct 163545 TCTTAAATCTTAGCCTTGACAGCATCAATGGTGTCTGAAGGCTCCACATCAAGTGTGATA 163604 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| |||||||||| ||| Sbjct 163605 GTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 163639 >seq99 Length=47800 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || || |||||||||| ||| |||||||| | ||| | | Sbjct 7390 CTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATCTGAAAGTGTTCTTCCA 7331 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||||| | || | || || | || || || || ||||| ||| Sbjct 7330 TCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTA 7271 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| |||| || || | ||||| || | || || || ||||| | Sbjct 7270 TCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATG 7211 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| ||||||||||| |||||||| Sbjct 7210 GTTTTTCCAGTTAATGTTTTTACAAATATTTGCAT 7176 >seq70 Length=215836 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||||||||| || || ||||||||||||| || ||||| || | ||| | | Sbjct 1131 CTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 1190 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||||| | || | || || | || || || || ||||| || Sbjct 1191 TCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 1250 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| |||| || || | ||||| || | || || || ||||||| Sbjct 1251 TCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATA 1310 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || || ||||||| ||| Sbjct 1311 GTCTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 1345 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||||||||| || || ||||||||||||| || ||||| || | ||| | | Sbjct 903 CTCAACACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCA 962 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||| |||||||| | || | || || | || || || || ||||| || Sbjct 963 TCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTG 1022 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| |||||| |||| || || | ||||| || | || || || ||||| | Sbjct 1023 TCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATG 1082 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || | ||| || || ||||||| ||| Sbjct 1083 TTTTTTCCAGTCAAAGTCTTAACGAAAATTTACAT 1117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999261922120