Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq569 150 2e-31 seq202 141 1e-28 >seq569 Length=435734 Score = 150 bits (166), Expect = 2e-31 Identities = 485/740 (66%), Gaps = 21/740 (3%) Strand=Plus/Minus Query 154374 CATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTAAAGATTTCTCATTA 154433 |||||||||||||| ||| ||||||| ||| || | ||| | | || ||| |||||||| Sbjct 243197 CATAGTGAAACTGAAATGTTGAGATACATCAACTATTTAAGATAGAAGGATGTCTCATTA 243138 Query 154434 GTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTA 154493 || |||| || || | || ||||| ||||||||||| ||| || | | | Sbjct 243137 ACTAAGTCTATGATTTCATTAGGTAGTTGTACAATGAAATTGAATCCAACTTCTTTCATG 243078 Query 154494 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 154553 ||||||| |||| ||| || | | ||||||| | | ||| || || Sbjct 243077 TTGCCTGTCTCATTTTAAGGATTCTCCCAATTGCATCCCTTTTCCCCTTTGTCTTGCACT 243018 Query 154554 ATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTT 154613 || ||| | || | | || | | | ||||||||||| ||||| ||| | Sbjct 243017 TAAGGCTATTAAGAATTAACTGAAAATGTTGAAAAATGGTTATGCGATATTACACAAATG 242958 Query 154614 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 154673 || || | || ||| |||||| || | | || || || |||| | ||| Sbjct 242957 GAAGCTGTGTCCTTAATGCCTAACAGTGGTGCTTAAGGGGAATACTCAGGTTTATTATGC 242898 Query 154674 ATCCAAGCATACCA--TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG 154731 ||| | ||| || ||| | || ||| | | | ||||| ||||||| || ||| Sbjct 242897 ATCAGAAAATATCACATCATGAAT--GGACAAAAGGATAGAAACATATGTTTAATTCCAA 242840 Query 154732 AGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTG 154791 || || ||||| |||||||||||| ||||| | || || | | |||||| | Sbjct 242839 TATCTGCTCATGGTACTAATCCTGCTTCAGCTGTTCTTGCTGGATTAACTGTTGTACCAG 242780 Query 154792 TCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAG-CAATCA-- 154848 | || |||| | |||||| | | || | || ||| || | |||||| ||| | Sbjct 242779 TTAA-TGTGGTA--GATGGTTATGTTGATTTGAATGATTTAAATAAGAAAATCAAAGAAA 242723 Query 154849 -TGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTT 154907 |||| | || || |||| |||||||||||||| ||||| || |||| || | | Sbjct 242722 ATGAAAAGTCTT----TGGCATGCATTATGATTACATATCCATCAACTTATGGAGTCTAT 242667 Query 154908 GA--AACTAACATTAGACAGA-TATGTAAGATCGTTCATGACAATGGTGGTCAGGTATAT 154964 || | | |||| ||| ||| ||| ||| | ||||||| |||| ||| || ||| Sbjct 242666 GAAGATCAAACA-AAGA-AGATTATTTAA-TTAATTCATGAGCATGGAGGTTTAGTTTAT 242610 Query 154965 CTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCA 155024 | |||||||| ||| | ||||| |||| ||| || || | | | || ||| Sbjct 242609 ATGGATGGAGCCAATATGAATGCTTAGGTTGGATATACATCTCCTGGATATTTAGGAGCA 242550 Query 155025 GATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCT 155084 ||||| |||||| | || | ||||| ||||||| || |||||||| || || |||||| Sbjct 242549 GATGTTTGTCATTTGAATCTTCATAAGACATTCTCAATCCCACATGGTGGAGGTGGTCCT 242490 Query 155085 GGCGTAGGTCCTATAGGTGT 155104 || |||||||||| | ||| Sbjct 242489 GGATTAGGTCCTATTGCTGT 242470 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 153207 ATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAG 153266 ||||| ||||| || ||||| || ||||| ||||| | |||| || ||||| Sbjct 244367 ATAGGCCAAGGCTATTATGGTACTCACACACCGTATGTCATCTTGAGAAATGTACTTGAA 244308 Query 153267 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 153326 | || | ||||| ||||| || ||||||||| |||||||||| |||||||| ||| | Sbjct 244307 GACCCAGGATGGTATACATCCTATACTCCCTATTAAGCTGAGATTTCTCAGGGGAGACTT 244248 Query 153327 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAAC 153386 |||||| | |||||||||| || | ||||| ||| | ||||| | || | || Sbjct 244247 GAAGCTCTTCTCAATTACCAGACTGTAATCACTGAATTAACAGGTATGGATGTATCTAAT 244188 Query 153387 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATTAGCATAT 153440 || || |||| || ||||||||||| |||| |||||||||| | || ||| || Sbjct 244187 GCCTCATTATTGGACGAAGCAACTGCTGCAGGAGAAGCAATGTTCTTGGCAAAT 244134 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 153769 AAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 153828 |||| || ||| | |||||||| | ||| || || |||||||| || |||||| || Sbjct 243808 AAAGATTCGGTGTACCTATGGGTTTTGGTGGACCACATGCTGCTTTTTTTGCAGTTGAAG 243749 Query 153829 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTA 153888 || | | || ||||| || || || | ||| | ||| || ||| | | || | Sbjct 243748 ACGAATTCAAAAGAAAAATGCCAGGACGTATTATTGGTATTTCCAAAGACACCAATGGAA 243689 Query 153889 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAA 153948 | ||| || ||| | || | || || ||||| | |||||||| ||||| || || | Sbjct 243688 AATCAGCCTATAGAATGTCATTGCAAACCAGAGAATAACATATCAGAAGAGAAAAGGCCA 243629 Query 153949 CCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCAT 154008 || || ||||| ||||| | ||| | ||||||||||| |||| || |||||| | | Sbjct 243628 CCTCCAATATCTGTACAGCATAAGCATTATTGGCTAATATGGCTGGCTTTTATGCAACTT 243569 Query 154009 ATCATGGTGCAGATGGACTACA 154030 | |||||| | | ||| |||| Sbjct 243568 ACCATGGTCCTTAAGGATTACA 243547 >seq202 Length=539671 Score = 141 bits (156), Expect = 1e-28 Identities = 490/744 (66%), Gaps = 29/744 (4%) Strand=Plus/Plus Query 154374 CATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTAAAGATTTCTCATTA 154433 |||||||||||||| ||| ||||||| ||| || | ||| | | |||||| |||||||| Sbjct 217296 CATAGTGAAACTGAAATGTTGAGATACATCAACTATTTAAGATAAAAAGATGTCTCATTA 217355 Query 154434 GTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTA 154493 || |||| || || | || ||||| || |||||||| ||| || | | | Sbjct 217356 ACTAAGTCTATGATTTCATTAGGTAGTTGTACTATGAAATTGAATCCAACCTCTTTCATG 217415 Query 154494 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 154553 ||||||| |||| ||| || | | |||||||| | | ||| || || Sbjct 217416 TTGCCTGTCTCATTCTAAGGATTCTCCCAATTGCATCCATTTTCCCCTTTGTCTTGTACT 217475 Query 154554 ATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTT 154613 || ||| | || | | ||| | | | ||||||||||| ||||| ||| || Sbjct 217476 TAAGGCTATTAAGAATTGACAGAAAATGTTGAAAAATGGTTATGCGATATTACACAATTG 217535 Query 154614 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 154673 || || | || ||| |||||| || | | || || || |||| | ||| Sbjct 217536 GAAGCTGTGTCCTTAATGCCTAACAGTGGTGCCTAAGGAGAATACACAGGTTTATTATGC 217595 Query 154674 ATCCAAGCATACCA--TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG 154731 ||| | ||| || ||| | || ||| | | | |||||| | ||||| || ||| Sbjct 217596 ATCAGAAAATATCACATCATGAAT--GGACAAAAAGATAGAAATATTTGTTTAATTCCAA 217653 Query 154732 AGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTG 154791 || || ||||| |||||||||||| ||||| | || || | | |||||| | Sbjct 217654 TATCTGCTCATGGTACTAATCCTGCTTCAGCTGTTCTTGCTGGATTAACTGTTGTACCAG 217713 Query 154792 TCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAG-CAATCA-- 154848 | || |||| | || ||| | | || | || ||| | | |||||| ||| | Sbjct 217714 TTAA-TGTGGTA--GACGGTTATGTTGATTTGAATGATTTGAATAAGAAAATCAAAGAAA 217770 Query 154849 -TGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTT 154907 |||| | || || |||| |||||||||||||| ||||| || |||| || | | Sbjct 217771 ATGAAAAGTCTT----TGGCATGCATTATGATTACATATCCATCAACTTATGGAGTCTAT 217826 Query 154908 GAAACT--AACATTAGACAGAT-ATGTAAGATCGTTCATGACAATGGTGGTCAGGTATAT 154964 ||| | |||| ||| |||| || ||| | ||||||| |||| || || ||| Sbjct 217827 GAAGATCAAACAA-AGA-AGATTATTTAAT-TGATTCATGAGCATGGAGGATTAGTGTAT 217883 Query 154965 CTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAAC-CATGTGAGTAT---GG 155020 | |||||||| ||| | ||||| |||| ||| || || | | | || || ||| || Sbjct 217884 ATGGATGGAGCCAATATGAATGCCTAGGTTGGA-TA-CACATCTCCTG-GA-TATTTGGG 217939 Query 155021 TGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGG 155080 || ||||| || || | || | ||||| ||||||| || ||||||||||| || || Sbjct 217940 AGCTGATGTTTGCCACTTGAATCTCCATAAGACATTCTCCATCCCACATGGAGGAGGTGG 217999 Query 155081 TCCTGGCGTAGGTCCTATAGGTGT 155104 |||||| |||||||||| | ||| Sbjct 218000 TCCTGGATTAGGTCCTATTGCTGT 218023 Score = 109 bits (120), Expect = 6e-19 Identities = 188/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 153769 AAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 153828 |||| |||||| | |||||||| | ||| || || || ||||| ||||||||| || Sbjct 216685 AAAGATTTGGTGTACCTATGGGTTTTGGTGGACCACACGCTGCTTTCTTTGCAGTTGAAG 216744 Query 153829 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTA 153888 || | | || ||||| || || || | || | ||| || ||| | || | Sbjct 216745 ACGAATTCAAAAGAAAAATGCCAGGACGTATCATTGGTATTTCCAAGGATGCCAATGGAA 216804 Query 153889 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAA 153948 | ||| || ||| | || | || || ||||| | || ||||| ||||| || || | Sbjct 216805 AATCAGCCTATAGAATGTCATTGCAAACCAGAGAATAACACATCAGAAGAGAAAAGGCCA 216864 Query 153949 CCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCAT 154008 || || ||||| |||||||| ||| | ||||||||||| |||| || |||||| | | Sbjct 216865 CCTCCAATATCTGTACAGCTCAAGCATTATTGGCTAATATGGCTGGCTTTTATGCAACTT 216924 Query 154009 ATCATGGTGCAGATGGACTACATGCTATAGCAA 154041 | |||||| || | ||| |||| ||||||| Sbjct 216925 ACCATGGTCCATAGGGATTACAGAAGATAGCAA 216957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207753608480