Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq202 172 6e-38 seq569 167 3e-36 >seq202 Length=539671 Score = 172 bits (190), Expect = 6e-38 Identities = 498/745 (67%), Gaps = 31/745 (4%) Strand=Plus/Plus Query 159049 CATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTCATTA 159108 |||||||| ||||| ||| ||||||| ||| | | ||| || ||||||| |||||||| Sbjct 217296 CATAGTGAAACTGAAATGTTGAGATACATCAACTATTTAAGATAAAAAGATGTCTCATTA 217355 Query 159109 GTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTG 159168 || |||| || || | |||||||||||||||||| | || || | || || Sbjct 217356 ACTAAGTCTATGATTTCATTAGGTAGTTGTACTATGAAATTGAATCCAACCTCTTTCATG 217415 Query 159169 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 159228 ||||||| |||| ||| || | | |||||||| | | ||| || || Sbjct 217416 TTGCCTGTCTCATTCTAAGGATTCTCCCAATTGCATCCATTTTCCCCTTTGTCTTGTACT 217475 Query 159229 ATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTT 159288 || ||| || || | | ||| | | | ||||||||||| ||||| ||| || Sbjct 217476 TAAGGCTATTAAGAATTGACAGAAAATGTTGAAAAATGGTTATGCGATATTACACAATTG 217535 Query 159289 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 159348 || || | || ||| |||||| || | | || || || |||| | ||| Sbjct 217536 GAAGCTGTGTCCTTAATGCCTAACAGTGGTGCCTAAGGAGAATACACAGGTTTATTATGC 217595 Query 159349 ATCCAAGCATACCA--TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG 159406 ||| | ||| || ||| | || ||| | | | |||||| | ||||| || ||| Sbjct 217596 ATCAGAAAATATCACATCATGAAT--GGACAAAAAGATAGAAATATTTGTTTAATTCCAA 217653 Query 159407 AGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTG 159466 || || ||||| ||||||||||| ||||| || | || || | | |||||| | Sbjct 217654 TATCTGCTCATGGTACTAATCCTGCTTCAGCTGTTCTTGCTGGATTAACTGTTGTACCAG 217713 Query 159467 TCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG-CAATCA-- 159523 | || |||| | || || | | || | || ||| | | |||||| ||| | Sbjct 217714 TTAA-TGTGGTA--GACGGTTATGTTGATTTGAATGATTTGAATAAGAAAATCAAAGAAA 217770 Query 159524 -TGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTT 159582 |||| | || || |||| |||||||||||||||||||| || |||| || | | Sbjct 217771 ATGAAAAGTCTT----TGGCATGCATTATGATTACATATCCATCAACTTATGGAGTCTAT 217826 Query 159583 GAAA--CAAACATCAGACAGAT-ATGTAAGATTG-TTCATGAGAATGGTGGTCAGGTATA 159638 ||| |||||| ||| |||| || ||| ||| |||||||| |||| || || || Sbjct 217827 GAAGATCAAACAA-AGA-AGATTATTTAA--TTGATTCATGAGCATGGAGGATTAGTGTA 217882 Query 159639 TCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAAC-CATGTGACTAT---G 159694 | | ||||| || ||| | ||||| |||| || || || | | | || || ||| | Sbjct 217883 TATGGATGGAGCCAATATGAATGCCTAGGTTGGA-TA-CACATCTCCTG-GA-TATTTGG 217938 Query 159695 GTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAG 159754 | || ||||| || || | || | ||||||||||||| || ||||||||||| || | Sbjct 217939 GAGCTGATGTTTGCCACTTGAATCTCCATAAGACATTCTCCATCCCACATGGAGGAGGTG 217998 Query 159755 GTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||| |||||||||||| ||| Sbjct 217999 GTCCTGGATTAGGTCCTATTGCTGT 218023 Score = 114 bits (126), Expect = 2e-20 Identities = 189/273 (69%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 158444 AAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 158503 |||| |||||| | |||||||| | || || || || ||||| ||||||||| || Sbjct 216685 AAAGATTTGGTGTACCTATGGGTTTTGGTGGACCACACGCTGCTTTCTTTGCAGTTGAAG 216744 Query 158504 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTA 158563 || | | || ||||| || || || | || | ||| || ||| | | || | Sbjct 216745 ACGAATTCAAAAGAAAAATGCCAGGACGTATCATTGGTATTTCCAAGGATGCCAATGGAA 216804 Query 158564 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAA 158623 | ||| || ||| | || | || || ||||| | || ||||||||||| || || | Sbjct 216805 AATCAGCCTATAGAATGTCATTGCAAACCAGAGAATAACACATCAGAAGAGAAAAGGCCA 216864 Query 158624 CCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCAT 158683 || || ||||| ||||| |||||| | ||||||||||| |||| || |||||| | | Sbjct 216865 CCTCCAATATCTGTACAGCTCAAGCATTATTGGCTAATATGGCTGGCTTTTATGCAACTT 216924 Query 158684 ATCATGGTGCAGATGGACTACATGCTATAGCAA 158716 | |||||| || | ||| |||| ||||||| Sbjct 216925 ACCATGGTCCATAGGGATTACAGAAGATAGCAA 216957 >seq569 Length=435734 Score = 167 bits (184), Expect = 3e-36 Identities = 491/741 (66%), Gaps = 23/741 (3%) Strand=Plus/Minus Query 159049 CATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTCATTA 159108 |||||||| ||||| ||| ||||||| ||| | | ||| || || ||| |||||||| Sbjct 243197 CATAGTGAAACTGAAATGTTGAGATACATCAACTATTTAAGATAGAAGGATGTCTCATTA 243138 Query 159109 GTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTG 159168 || |||| || || | ||||||||||| |||||| | || || | || || Sbjct 243137 ACTAAGTCTATGATTTCATTAGGTAGTTGTACAATGAAATTGAATCCAACTTCTTTCATG 243078 Query 159169 ATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGATACAGACC 159228 ||||||| |||| ||| || | | ||||||| | | ||| || || Sbjct 243077 TTGCCTGTCTCATTTTAAGGATTCTCCCAATTGCATCCCTTTTCCCCTTTGTCTTGCACT 243018 Query 159229 ATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGTTATGTGATATCACAGGGTTT 159288 || ||| || || | | || | | | ||||||||||| ||||| ||| | Sbjct 243017 TAAGGCTATTAAGAATTAACTGAAAATGTTGAAAAATGGTTATGCGATATTACACAAATG 242958 Query 159289 GATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCA 159348 || || | || ||| |||||| || | | || || || |||| | ||| Sbjct 242957 GAAGCTGTGTCCTTAATGCCTAACAGTGGTGCTTAAGGGGAATACTCAGGTTTATTATGC 242898 Query 159349 ATCCAAGCATACCA--TCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAG 159406 ||| | ||| || ||| | || ||| | | | ||||| ||||||| || ||| Sbjct 242897 ATCAGAAAATATCACATCATGAAT--GGACAAAAGGATAGAAACATATGTTTAATTCCAA 242840 Query 159407 AGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTG 159466 || || ||||| ||||||||||| ||||| || | || || | | |||||| | Sbjct 242839 TATCTGCTCATGGTACTAATCCTGCTTCAGCTGTTCTTGCTGGATTAACTGTTGTACCAG 242780 Query 159467 TCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG-CAATCA-- 159523 | || |||| | ||||| | | || | || ||| || | |||||| ||| | Sbjct 242779 TTAA-TGTGGTA--GATGGTTATGTTGATTTGAATGATTTAAATAAGAAAATCAAAGAAA 242723 Query 159524 -TGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTT 159582 |||| | || || |||| |||||||||||||||||||| || |||| || | | Sbjct 242722 ATGAAAAGTCTT----TGGCATGCATTATGATTACATATCCATCAACTTATGGAGTCTAT 242667 Query 159583 GAAA--CAAACATCAGACAGAT-ATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATAT 159639 ||| |||||| ||| |||| || ||| | |||||||| |||| ||| || ||| Sbjct 242666 GAAGATCAAACAA-AGA-AGATTATTTAAT-TAATTCATGAGCATGGAGGTTTAGTTTAT 242610 Query 159640 CTTGATGGTGCAAATCTAAATGCACAGGTAGG-TCTAGCAAAACCATGTGACTATGGTGC 159698 | ||||| || ||| | ||||| |||| || | || || || | | | || || Sbjct 242609 ATGGATGGAGCCAATATGAATGCTTAGGTTGGATATA-CATCTCCTGGATATTTAGGAGC 242551 Query 159699 AGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCC 159758 |||||| |||||| | || | ||||||||||||| || |||||||| || || ||||| Sbjct 242550 AGATGTTTGTCATTTGAATCTTCATAAGACATTCTCAATCCCACATGGTGGAGGTGGTCC 242491 Query 159759 TGGCGTAGGTCCTATTGGTGT 159779 ||| |||||||||||| ||| Sbjct 242490 TGGATTAGGTCCTATTGCTGT 242470 Score = 145 bits (160), Expect = 9e-30 Identities = 175/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 ||||| ||||| || ||||| || |||||| ||||| | |||| || ||||| Sbjct 244367 ATAGGCCAAGGCTATTATGGTACTCACACACCGTATGTCATCTTGAGAAATGTACTTGAA 244308 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 | || | ||||| ||||| || ||||||||| |||||||||| |||||||| ||| | Sbjct 244307 GACCCAGGATGGTATACATCCTATACTCCCTATTAAGCTGAGATTTCTCAGGGGAGACTT 244248 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGAT--AGCAA 158059 |||||| | |||||||||| || | ||||| ||| | ||||| || ||| | | | Sbjct 244247 GAAGCTCTTCTCAATTACCAGACTGTAATCACTGAATTAACAGG--TATGGATGTATCTA 244190 Query 158060 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTGTTAGCATAT 158115 | || || |||| || ||||||||||| |||| |||||||||| | || ||| || Sbjct 244189 ATGCCTCATTATTGGACGAAGCAACTGCTGCAGGAGAAGCAATGTTCTTGGCAAAT 244134 Score = 116 bits (128), Expect = 4e-21 Identities = 183/262 (70%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 158444 AAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 158503 |||| || ||| | |||||||| | || || || |||||||| || |||||| || Sbjct 243808 AAAGATTCGGTGTACCTATGGGTTTTGGTGGACCACATGCTGCTTTTTTTGCAGTTGAAG 243749 Query 158504 ACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTA 158563 || | | || ||||| || || || | ||| | ||| || ||| | | | || | Sbjct 243748 ACGAATTCAAAAGAAAAATGCCAGGACGTATTATTGGTATTTCCAAAGACACCAATGGAA 243689 Query 158564 ATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAA 158623 | ||| || ||| | || | || || ||||| | |||||||||||||| || || | Sbjct 243688 AATCAGCCTATAGAATGTCATTGCAAACCAGAGAATAACATATCAGAAGAGAAAAGGCCA 243629 Query 158624 CCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCAT 158683 || || ||||| |||||| ||||| | ||||||||||| |||| || |||||| | | Sbjct 243628 CCTCCAATATCTGTACAGCATAAGCATTATTGGCTAATATGGCTGGCTTTTATGCAACTT 243569 Query 158684 ATCATGGTGCAGATGGACTACA 158705 | |||||| | | ||| |||| Sbjct 243568 ACCATGGTCCTTAAGGATTACA 243547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588046076603920