Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq36 158 3e-33 seq71 141 2e-28 seq247 109 1e-18 seq114 100 6e-16 seq70 95.1 3e-14 >seq36 Length=667686 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | ||| ||||| || ||||||| |||||| ||||| | |||||| Sbjct 163418 TCTTAATCTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATCTGAAAGAGT 163477 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| || ||||| ||||| || || | || || ||| || || ||||| || Sbjct 163478 TCTTCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGTGGAATTCC 163537 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||| ||| || |||||| ||||||||||| ||| ||||| ||||| Sbjct 163538 TTCTTTATCTTAAATCTTAGCCTTGACAGCATCAATGGTGTCTGAAGGCTCCACATCAAG 163597 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || | ||||| || || | || ||| Sbjct 163598 TGTGATAGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 163639 >seq71 Length=215326 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | |||||||||||| || |||| ||| || || || | ||| || Sbjct 119676 TCTCAATCTTAAGACTAAGTGAAGAGTGGATTCCTTTTAAATGTTATAGTCTGAAAGTGT 119735 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | ||||| ||||||||||||| ||||| || || || || || Sbjct 119736 TCTTCCGTCTTCTAATTATTTACCAGCGAAGATAAGTCTTTGTTAATCGGGTGGGATTCC 119795 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| ||||| |||||| ||||| ||||| || ||| || ||||| Sbjct 119796 TTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTGTCAGATGGTTCAACATCAAG 119855 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || |||||||| | || |||||||| | || |||| Sbjct 119856 AGTGATTGTTTTTCCTGTGAGTGTCTTTACGAAAATTTACATT 119898 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | |||||| || || || |||| ||| || || || | ||| || Sbjct 119218 TCTCAATCTCAAGACCAAGTGAAGGGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGT 119277 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | | ||| || || |||||||||| || || || || || || || Sbjct 119278 TCTTCCATCTTCTAATTACTTTCCAGCAAAGATAAGTCTTTATTAATCAGGGGGGATTCC 119337 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| ||||| |||||| ||||| ||||| || ||| || ||||| Sbjct 119338 TTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTGTCAGATGGTTCAACATCAAG 119397 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||||||||| | || || ||||| | || |||| Sbjct 119398 AGTGATAGTCTTTCCTGTGAGTGTCTTGACGAAGATTTACATT 119440 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | |||||| ||||| || |||| ||| || || || | ||| || Sbjct 118762 TCTCAATCTTAAAACCAAGTGAAGTGTGGATTCCTTTTAAATGTTATAGTCTGAAAGTGT 118821 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | ||| || ||||||||||||| ||||| || || || || || Sbjct 118822 TCTTCCGTCTTCTAATTACTTTCCAGCGAAGATAAGTCTTTGTTAATCGGGTGGGATTCC 118881 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| ||||| ||| || ||||| ||||| || ||| || ||||| Sbjct 118882 TTCCTTATCTTAGATTTTAGCCTTAACAGCATCAATAGTGTCAGATGGTTCAACATCAAG 118941 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || |||||||| | || || ||||| | || |||| Sbjct 118942 AGTGATTGTTTTTCCTGTAAGTGTCTTGACGAAGATTTACATT 118984 Score = 111 bits (122), Expect = 3e-19 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTT--GAATATTGTAATCGGCAAGA 194976 ||| | ||| ||||| | |||||| || || || | || || | || ||||| | || Sbjct 119446 TCTTAATCTTAAAACCAAGTGAAGGGTTGATTCCTCTTTAGATTGTTATAATCTGAGAGT 119505 Query 194977 GTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036 ||||| || ||||| | | ||||| ||||||||||||| || || || || || || Sbjct 119506 GTTCTTCCGTCTTCTAATTATTTACCAGCGAAGATAAGTCTTTATTAATCGGGGGGGATT 119565 Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||| |||||||| || || ||| || ||||||||||| || ||| || ||| Sbjct 119566 CCTTCCTTGTCTTGGATCTTAGCCTTAACAGCATCAATGGTGTCAGATGGTTCAACATCA 119625 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | |||||||| || | || || ||||| | || |||| Sbjct 119626 AGAGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTACATT 119670 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | |||||| || || || |||| ||| || || || | ||| || Sbjct 118990 TCTCAATCTTAAGACCAAGTGAAGGGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGT 119049 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | | ||||| ||||||||||||| || || || || || || || Sbjct 119050 TCTTCCGTCTTCTAATTATTTACCAGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCC 119109 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || |||| ||||| ||| || ||||| ||||| || ||| || ||||| Sbjct 119110 TTCCTTATCTTAGATTTTAGCCTTAACAGCATCAATAGTGTCAGATGGTTCAACATCAAG 119169 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || |||||||| | || || ||||| | || |||| Sbjct 119170 AGTGATTGTTTTTCCTGTAAGTGTCTTGACGAAGATTTACATT 119212 >seq247 Length=527326 Score = 109 bits (120), Expect = 1e-18 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | || ||||| || || ||||| || || ||||| | |||||| Sbjct 406064 TCTGAGTCTCAATACCAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCTGAAAGAGT 406005 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | ||||| || ||||| || | || || ||| || ||||| || || Sbjct 406004 TCTTCCATCTTCCAATTGCTTTCCAGCGAAAATTAATCTTTATTGATCGGGAGGGATTCC 405945 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| | || ||| ||| || || || ||||| || || || || || Sbjct 405944 TTCCTTGTCCTAGATCTTTGCCTTAACAGCATCGATAGTGTCAGATGGCTCAACATCGAG 405885 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || | ||||| || || | || || || || | || ||| |||| Sbjct 405884 TGTGATGGTCTTACCCGTGAGGGTCTTAACAAAAATTTACATATTAT 405838 >seq114 Length=584889 Score = 100 bits (110), Expect = 6e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||||||||| || | || ||||| || || |||| || || ||||||| |||||| Sbjct 475545 TCTGAGTCTCAATACTAAATGGAGAGTTGATTCCTTTTAGATGTTATAATCGGAAAGAGT 475486 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || | ||||| || || || || | || || || || ||||| || || Sbjct 475485 TCTTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCGGGAGGGATTCC 475426 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| || ||| ||| || || || || || || || || || || Sbjct 475425 TTCTTTGTCTTAGATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCGACATCGAG 475366 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT-TTAT 195144 || | ||||| || || | || || || || | || ||| |||| Sbjct 475365 TGTGATGGTCTTGCCCGTGAGGGTCTTAACAAAAATTTACATATTAT 475319 >seq70 Length=215836 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| || || |||| || || || || || || ||||| ||||||| |||||| Sbjct 1 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 60 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| ||||| ||||| || ||| || ||||| |||| ||||||||||| Sbjct 61 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATAGTCTTTCCTGTT 120 Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142 |||||||| || || | || ||||| Sbjct 121 AAAGTTTTAACAAATATTTACATTT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109471691982599