Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq247 98.7 6e-16 seq71 93.3 3e-14 seq60 84.2 1e-11 >seq247 Length=527326 Score = 98.7 bits (108), Expect = 6e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| || | ||||| ||||| || | || ||| || || |||||||| || ||| Sbjct 406069 CCTCCTCTGAGTCTCAATACCAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCTGAA 406010 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| |||| || ||||| || || |||| || || || || | || Sbjct 406009 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCGAAAATTAATCTTTATTGATCGGGAGGG 405950 Query 34875 ACCCCCTCCTTGTCGCTA-ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| ||| ||||| || || | | || | ||| | |||||| Sbjct 405949 ATTCCTTCCTTGTC-CTAGATCTTTGCCTTAACAGCATCGATAGTGTCAGATGGCTCAAC 405891 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || ||||| || |||||||| ||||| ||||| || | |||||| Sbjct 405890 ATCGAGTGTGATGGTCTTACCCGTGAGGGTCTTAACAAAAATTTACATATT 405840 >seq71 Length=215326 Score = 93.3 bits (102), Expect = 3e-14 Identities = 173/252 (69%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 34733 ACATATGCATA--TCCAATCATTT-CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCT 34789 ||||||| ||| | ||||||| ||||| ||||| || ||||||||||||| |||| Sbjct 118732 ACATATGGATAGTTTAAATCATTAGCCTCCTCTCAATCTTAAAACCAAGTGAAGTGTGGA 118791 Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || | |||||||||||| ||||| ||| | | || || | | ||||| || || Sbjct 118792 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCGAA 118851 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| ||| | || | || | || ||||| || || || || || | Sbjct 118852 GATAAGTCTTTGTTAATCGGGTGGGATTCCTTCCTTATCTTAGATTTTAGCCTTAACAGC 118911 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | |||||||| | || || |||||||| || || ||||| || Sbjct 118912 ATCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCTGTAAGTGTCTTGAC 118971 Query 34970 AAAGATCTGCAT 34981 ||||| | ||| Sbjct 118972 GAAGATTTACAT 118983 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| ||||| |||||||||| || ||| || | |||||||||||| | Sbjct 119211 TTCCTCCTCTCAATCTCAAGACCAAGTGAAGGGTTGATTCCTTTTAAATGTTATAGTCTG 119270 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | |||| || | | ||||| ||||| || |||| || | || | | Sbjct 119271 AAAGTGTTCTTCCATCTTCTAATTACTTTCCAGCAAAGATAAGTCTTTATTAATCAGGGG 119330 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| || || ||||| | | || | ||| | |||| Sbjct 119331 GGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTGTCAGATGGTTCAA 119390 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| | || || || ||||| ||||| ||||| || ||||| | ||| Sbjct 119391 CATCAAGAGTGATAGTCTTTCCTGTGAGTGTCTTGACGAAGATTTACAT 119439 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||| || || || ||||||| ||| ||| || | |||||||||||| | Sbjct 119669 TTCCTCCTCTCAATCTTAAGACTAAGTGAAGAGTGGATTCCTTTTAAATGTTATAGTCTG 119728 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| | | || || | | ||| || || || || |||| ||| | || | | Sbjct 119729 AAAGTGTTCTTCCGTCTTCTAATTATTTACCAGCGAAGATAAGTCTTTGTTAATCGGGTG 119788 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| || || ||||| | | || | ||| | |||| Sbjct 119789 GGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTGTCAGATGGTTCAA 119848 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| | || || |||||||| ||||| ||||| || || || | ||| Sbjct 119849 CATCAAGAGTGATTGTTTTTCCTGTGAGTGTCTTTACGAAAATTTACAT 119897 >seq60 Length=234462 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||| ||||| || |||||||||||| ||| || || |||||||| || | Sbjct 128871 CCTCCTCTCAATCTCAATACTAAGTGAATTGTGGATTCCTTTTGGATGTTATAATCTCCA 128930 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||| | |||| || | | |||||| ||||| ||||||| || | || | || Sbjct 128931 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCAAAAATTAGTCTTTATTAATCAGGTGGG 128990 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT-GCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| || || || || | || | || | || | | |||||| Sbjct 128991 ATTCCTTCCTTGTC-CTGGATTTTTGATTTAATCATATCAATTGTTTAGTCTGGCTCAAC 129049 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| | || || || ||||| | ||| |||| ||||| || | ||| Sbjct 129050 ATCAAGAGTAATTGTCTTTCCACTAAGATTCTTTACAAAAATTTACAT 129097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630842339016