Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq613 284 1e-71 seq697 255 7e-63 >seq613 Length=410769 Score = 284 bits (314), Expect = 1e-71 Identities = 577/844 (68%), Gaps = 21/844 (2%) Strand=Plus/Plus Query 36829 AAAAATCTTCATCTAACGTAAAT--TTTATTTCCTTATTACTATTCATAACTCCCATTTT 36886 |||| ||| |||| | |||||| ||||| | || || | |||||||||| ||| Sbjct 197272 AAAAGTCTGCATCCATAGTAAATACTTTATCTTATTTTT--TGCTCATAACTCCAGCTTT 197329 Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||| || |||||||||| ||||||||| ||||| || || |||| || ||||| | || Sbjct 197330 TTGGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAAGGATATCATATC 197389 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAG 37006 ||| | ||||| ||||| || ||| || || || | | ||| | | | Sbjct 197390 CATCCATTCAAAAGGATTCTTTGAATTGTAGATCTTAGGAGCTCCCAATGCAAATATCAA 197449 Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066 ||||| ||||| ||||| || |||| ||| | | | || || |||||||||| Sbjct 197450 TCTATCTGCAACGAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATTAGTTC 197509 Query 37067 TACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATAT 37125 ||||| | || || ||| ||| | |||||| ||| |||||| || || | Sbjct 197510 AACTGGTAAAGCTTCACTGATGAATTC-TTTTTCAATTTCAACAGCAGAAGAAATGATTT 197568 Query 37126 TAACAATAACTTCTTCAGTTGGGGGAT-ATT--TTAAATATTTAAACAATAAACATGCAA 37182 || |||| || | | | ||| | | || ||| | | | ||| |||| Sbjct 197569 ---CATGAACTCGTTGAATACTCAACTTATTAATCATATGTTTGTAAAGAAGACAAGCAA 197625 Query 37183 AATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCA 37242 | || ||| | |||||||||||| || |||||||| |||||||| | |||||||| Sbjct 197626 AGTCTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGCA 197685 Query 37243 TTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTT 37302 | || ||||||||| ||||||||||| || ||| || ||||||||||| || |||| Sbjct 197686 TCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCTT 197745 Query 37303 CAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtt 37362 |||| || ||||| || | | | | | | || |||| || || | |||||||| Sbjct 197746 CAACAGCAGCAAAGGCAATCAATCTTTCAGCAAA---TGAATCATTATTATTAATCCATT 197802 Query 37363 tttttGTCCAATCTGCCTTTAATTTAACA-CATTCAATTGTTTCAATTGCTTTTAAGAGA 37421 | ||| ||| ||| || || || | || || | | ||||| || | | ||| Sbjct 197803 TCATTGCCCACATTGCTTTCTTTTGAATAACAGGCACAT-TATCAATGGCATGGAGAAGA 197861 Query 37422 AAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT--ATACATTTCAG 37479 |||| || || | ||| |||||||| |||||||| | ||| | ||| |||| | Sbjct 197862 TAGTTCTTCTCATTTTCATCGGTTATATAGGTATCAATCA--AAAGTGAATAGGTTTCTG 197919 Query 37480 AGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAA 37539 ||||||| || || |||||||| | ||| ||||| || || || ||||||| | ||| | Sbjct 197920 AGTGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATCTTGCTTCAGGAACTTGCA 197979 Query 37540 CATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGA 37599 | || || | ||| | || ||||||||||| || || |||||||| |||||||||| Sbjct 197980 CTTCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAATACCATCACTTGCTGCAAAGA 198039 Query 37600 AAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAA 37659 | ||||| |||||||| ||||| || ||||||| | | ||||| |||||| |||| Sbjct 198040 AGGCAAGTACATATTTAATAAAGTGCTTTTCATCGGCAGTGAGTTTTTCCCAATCTTTAA 198099 Query 37660 TATC 37663 ||| Sbjct 198100 GATC 198103 >seq697 Length=319182 Score = 255 bits (282), Expect = 7e-63 Identities = 570/844 (68%), Gaps = 25/844 (3%) Strand=Plus/Minus Query 36831 AAATCTTCATCTAACGTAAAT--TTTATTTCCTTATTACTATTCATAACTCCCATTTTTT 36888 || ||| |||| | |||||| ||||| | || || || |||| ||||| ||||| Sbjct 147693 AAGTCTGCATCCATAGTAAATACTTTATCTTATTTTT--TACTCATGACTCCAGCTTTTT 147636 Query 36889 GATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCA 36948 |||| ||||| |||| ||||||||| ||||| || || |||| | ||||| | |||| Sbjct 147635 GATAGTCTCCCACTCTTCTTTCGAAGAAATTGGTTTTACCTTACAAAGATATCATATCCA 147576 Query 36949 TAAAATCAAATGGATTAGATGTATTATATAT------AGTACTACATGATAATTCCTTCA 37002 | | ||||| ||||| | ||| || || || || ||| ||| | Sbjct 147575 TCCACTCAAAAGGATTCTTCGAATTGTAAATCTTGGGAGCACCCAATGCAAATATC---- 147520 Query 37003 GAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTA 37062 | ||||| || |||||||| || |||| ||| | | | || || ||||| | Sbjct 147519 --AATCTATCTGCTACAAATTCAATATATTATTTCATCAAATTGGAATTCATTCCAATAA 147462 Query 37063 GTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTA 37122 ||| ||||| | || || || ||| |||||| ||| ||||| | | || Sbjct 147461 GTTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTCAACAGCCGATGATATTA 147402 Query 37123 TATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAA 37182 | | | ||| || | | | || ||||| || ||| | ||| |||| Sbjct 147401 TTTCATGAATTCTTTGATTACTCATTTTATTAACTAAATGCTTGTACAGGAGACAAGCAA 147342 Query 37183 AATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCA 37242 | || ||| | ||||||||| || || |||||||| || ||||| | ||| |||| Sbjct 147341 AGTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTTGAGAAGGTGAGTCCAGGCA 147282 Query 37243 TTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTT 37302 | || ||||||||| ||||||||||| || ||| || ||||||||||| || |||| Sbjct 147281 TCAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAACCAGAAAAGAAGATGCCTT 147222 Query 37303 CAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtt 37362 |||| || ||||| || | | | | | | | || |||| || ||| ||||||| Sbjct 147221 CAACAGCAGCAAAGGCAATCA-ATCTCT-CAGCAA-ATGAATCATTCTCATTTATCCATT 147165 Query 37363 tttttGTCCAATCTGCCTTTAATTTAA-CACATTCA-ATTGTTTCAATTGCTTTTAAGAG 37420 | | | ||| |||||| || || ||| || |||| |||||||| | || || Sbjct 147164 TCATAGCCCACATTGCCTTCTTTTGAATAACAGGCACATTG--TCAATTGCATGTAGAAG 147107 Query 37421 AAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGA 37480 | |||| ||||| | ||| ||||| ||||| || || | | | ||| |||| || Sbjct 147106 ATAGTTCTTTTCATTTTCATCGGTTATGTAAGTGTCTATCAAAAGAGAATAAGTTTCTGA 147047 Query 37481 GTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAAC 37540 || |||||||| || ||||| | ||| |||||||| || || ||||||| | || ||| Sbjct 147046 ATGTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATCTGGCTTCAGGCACTTAAAC 146987 Query 37541 ATCGTTAAAAAACCTCTTA-GCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGA 37599 || || | || || ||| || ||||||||||| || || |||||||| |||||||| | Sbjct 146986 TTCTGTACAGAA-CTATTAGGCCAAGTTTTCATTCACAATACCATCACTGGCTGCAAAAA 146928 Query 37600 AAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAA 37659 | || || ||||| || |||||||| |||||||| || | |||| |||||| |||| Sbjct 146927 AGGCTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAAGCTTTTCCCAATCTTTAA 146868 Query 37660 TATC 37663 ||| Sbjct 146867 GATC 146864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592311639439880