Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq99 143 2e-29 seq36 140 3e-28 seq114 122 7e-23 seq680 116 3e-21 seq247 104 2e-17 seq71 102 6e-17 seq60 100 2e-16 >seq99 Length=47800 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | |||||||| || || || ||||| |||| || || ||||| | Sbjct 7404 TTCCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATCTG 7345 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||| ||| |||||||| || | | | || ||| || | Sbjct 7344 AAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 7285 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| ||||||| |||||| || ||| || | |||||| || | ||| | Sbjct 7284 GGATTCCTTCCTTATCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAA 7225 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| ||||| || ||||| |||||||||||||| ||||| Sbjct 7224 CATCAAGAGTGATGGTTTTTCCAGTTAATGTTTTTACAAATATTTGCAT 7176 >seq36 Length=667686 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | |||||||| || || ||||||||||||| ||||| ||||| | Sbjct 163413 CCACCTCTTAATCTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATCTGAA 163472 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || | |||||| |||||||| ||||| | | |||||| || ||| Sbjct 163473 AGAGTTCTTCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGTGGA 163532 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||||| ||| || || ||| || | ||||| || | ||||| Sbjct 163533 ATTCCTTCTTTATCTTAAATCTTAGCCTTGACAGCATCAATGGTGTCTGAAGGCTCCACA 163592 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || || | ||||| ||||| || | ||| Sbjct 163593 TCAAGTGTGATAGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 163639 >seq114 Length=584889 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || |||||||| || || ||||| |||| || || ||||||| Sbjct 475550 CCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCCTTTTAGATGTTATAATCGGAA 475491 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || ||||| ||||| | | || |||||| || Sbjct 475490 AGAGTTCTTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCGGGAGGG 475431 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||| || ||| || ||| || | ||| ||||| | || || Sbjct 475430 ATTCCTTCTTTGTCTTAGATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCGACA 475371 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || | || || ||||| || | ||| Sbjct 475370 TCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTAACAAAAATTTACAT 475324 >seq680 Length=357438 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| | || |||||||| || || |||||||||| ||||| ||||| | Sbjct 173420 CCACCTCTTAATCTCAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAA 173479 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| | || || | |||||| ||||| || ||||| | | || ||| || ||| Sbjct 173480 AGTGTTCTTCCGTCTTCAAGTTGCTTTCCTGCGAAAATCAATCTTTATTAATCAGGAGGA 173539 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||||| ||| || || || || | ||||| || | || || Sbjct 173540 ATTCCTTCTTTATCTTAAATCTTGGCCTTGACTGCATCAATTGTGTCTGATGGCTCAACA 173599 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || || || | ||||| ||||| || | ||| Sbjct 173600 TCAAGAGTGATGGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 173646 >seq247 Length=527326 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | || || ||||| || || ||||| ||||| || || ||||| | Sbjct 406069 CCTCCTCTGAGTCTCAATACCAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCTGAA 406010 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||||||||| || || || || || | | ||||||||| || Sbjct 406009 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCGAAAATTAATCTTTATTGATCGGGAGGG 405950 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || | || ||| || ||| || | ||||||||| | || || Sbjct 405949 ATTCCTTCCTTGTCCTAGATCTTTGCCTTAACAGCATCGATAGTGTCAGATGGCTCAACA 405890 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || || || || | || || ||||| || | ||| Sbjct 405889 TCGAGTGTGATGGTCTTACCCGTGAGGGTCTTAACAAAAATTTACAT 405843 >seq71 Length=215326 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTG---TAAT 101297 ||||||||||||| | |||||| || |||||||| ||||| | || || |||| |||| Sbjct 119439 TTCCTCCTCTTAATCTTAAAACCAAGTGAAGGGTTGATTCCTCTT-TAGATTGTTATAAT 119497 Query 101298 CGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGG 101357 | | || ||||| | || || |||| ||||| || || || | | | || ||||| Sbjct 119498 CTGAGAGTGTTCTTCCGTCTTCTAATTATTTACCAGCGAAGATAAGTCTTTATTAATCGG 119557 Query 101358 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTT 101417 | || || ||||| || ||||| || || || ||| || | |||||||| | || Sbjct 119558 GGGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTAACAGCATCAATGGTGTCAGATGGTT 119617 Query 101418 CCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || |||||||||| || || || || | || || || || || | ||| Sbjct 119618 CAACATCAAGAGTGATGGTCTTTCCAGTGAGTGTCTTGACGAAGATTTACAT 119669 >seq60 Length=234462 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| || | || ||||| ||||| || ||||| |||| || || ||||| Sbjct 129097 TTCCACCTCTCAATCTCAAGACTAAGTGAAGAGTTGATTCCTTTTAGATGTTATAATCTT 129156 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| || |||||||| ||||| || || | | | || ||| || | Sbjct 129157 AAAGTGTTCTTCCATCCTCTAATTGCTTTCCTGCGAAAATGAGTCTTTATTAATCAGGTG 129216 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCA---GACGTTT 101417 | || ||||| || |||| |||||| ||| ||| || | ||| || ||| || Sbjct 129217 GGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACAGCATCAATAGTATCTTCTGACTTT- 129275 Query 101418 CCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||| | ||||| ||||||| ||||||||||| || || || Sbjct 129276 --ACATCGAGAGTAATAGTTTTTCCGGTTAGGGTTTTTACAAAAATTTGAAT 129325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396275033738829