Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq69 163 1e-35 seq446 156 2e-33 >seq69 Length=645506 Score = 163 bits (180), Expect = 1e-35 Identities = 188/253 (74%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||||||||| | ||| |||||| | | | || ||| | | |||||||| ||| || Sbjct 508880 ATTTGGACACATCAAAGTCCAATCCGAGTCATCCTTCACTCTTTACATAAATAGATCAGG 508939 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 ||||| | | |||| |||||||| ||||| |||||| | || || |||||| | Sbjct 508940 GATCCATAAACCTAAAAACAAATCTCTTGCTCTTTATTCTTCAATCCCATGGTTCTTTCT 508999 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | | ||||||| | |||||| ||||||||||||||||| ||||| || || Sbjct 509000 CAATTATAAGAAACTGATAATATCACTATGCCATGGTTCTAAATAAATAGCGAAGGATCC 509059 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 ||||||||| || || |||| |||||| |||||||| || |||||||| || |||||||| Sbjct 509060 TTTTCTTTTGCCACCTCCTTAATCTACATATCTTGCTGTATCATTGAACACCTTCAACAT 509119 Query 26128 TGGAACTAATCCA 26140 ||||| |||||| Sbjct 509120 AGGAACCAATCCA 509132 Score = 91.5 bits (100), Expect = 7e-14 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 24959 GGTGTCCA-AAGATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAA 25017 |||||||| ||| |||||| |||| ||| || || || ||| ||| || || Sbjct 507987 GGTGTCCATAAGTTTAATTCAATCAA-ATCATCAACTAAATGAGGATTAATGCAAACGAA 508045 Query 25018 TTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATT 25077 |||||||| ||| ||||||||| | | | ||| | ||| |||||||||| ||||||| Sbjct 508046 TTCTCCAGCCAACACTCTTCTTGTGTAGATGTTAGTAGTATATGGTTCAAATGATTCATT 508105 Query 25078 ATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCT 25137 |||| | |||| | || |||||||||||||| ||| || |||| ||||| || Sbjct 508106 ATTTTACAGAATTTAACTTGTTGATGCTGTTGGCATAGGTGCAATCAATAAAGAATTCCT 508165 Query 25138 CA 25139 || Sbjct 508166 CA 508167 >seq446 Length=770190 Score = 156 bits (172), Expect = 2e-33 Identities = 189/256 (74%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAG---CATTTTGCTCAACTTTCTCCATAAATAAATC 25944 ||||||||| | ||| |||||| | ||| || | ||| | | |||||||| ||| Sbjct 618872 ATTTGGACACATCAAAGTCCAATCTGAGTCATCTTTC---ACTCTTTACATAAATAGATC 618928 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 || ||||| | | |||| |||||||| ||||| |||||| | || || ||||| Sbjct 618929 AGGTATCCATAAACCTAAAAACAAATCTCTTGCTCTTTATTCTTCAATCCCATGGTTCTT 618988 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACT 26064 | | | | ||||||| | ||||| ||||||||||||||||| |||||||| Sbjct 618989 TCTCAATTATAAGAAACTTATGATATCACTATGCCATGGTTCTAAATAAATAGCAAAGGA 619048 Query 26065 ACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAA 26124 ||||||||||| || || |||| |||||| |||||||| || |||||||| || ||||| Sbjct 619049 TCCTTTTCTTTTGCCACCTCCTTAATCTACATATCTTGCTGTGTCATTGAACACCTTCAA 619108 Query 26125 CATTGGAACTAATCCA 26140 ||| || || |||||| Sbjct 619109 CATAGGCACCAATCCA 619124 Score = 111 bits (122), Expect = 8e-20 Identities = 219/317 (69%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 24867 AAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATC 24926 || |||| || ||| | ||| || | ||||||||| | ||||| | ||||| | Sbjct 617887 AAACTGTCTTATATAATTATTTGATATTAGTTGGAATCTCATCTATATTCTAGACTGAAC 617946 Query 24927 CATTTTCTCTCAATAGATTCAATCTC-ATATTCGGTGTCCA-AAGATTAATTTTTTCAAG 24984 |||| | | | || ||| | ||| || | |||||||| ||| |||||| |||| Sbjct 617947 CATTATTCATGATTA-ATTTATTCTTGATTTGGGGTGTCCATAAGTTTAATTCAATCAA- 618004 Query 24985 ATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTT--ATT 25042 ||| || || || ||| ||| || |||||||| | |||||||||| | || Sbjct 618005 ATCATCAACTAAATGAGGATTGATGCAAACGAATTCTCCTGCTAAAACTCTTCGTGTATA 618064 Query 25043 GATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGAT 25102 |||| |||| || | |||||||| ||||||||||| || |||| | || ||| Sbjct 618065 GATA--TTTGTTGTATAAGGTTCAAATGATTCATTATTTTATAGAATTTAACTTGTTGAT 618122 Query 25103 GCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGT 25162 ||||||||||| ||| ||||||| || ||||||| ||||| |||||||| | | | Sbjct 618123 GCTGTTGGCATAGGTGCAATTAATAAAGAGTTTCTCATTCCATACTTAACAATATTCTAT 618182 Query 25163 TTTAATTTATCCCAATC 25179 || | ||| |||||| Sbjct 618183 TTGAGAGTATTCCAATC 618199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037850504275