Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq569 176 5e-39 seq202 159 4e-34 >seq569 Length=435734 Score = 176 bits (194), Expect = 5e-39 Identities = 493/741 (67%), Gaps = 23/741 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| |||||||||||| |||||||| || || |||||||| || ||||||||||||| Sbjct 242470 ACAGCAATAGGACCTAATCCAGGACCACCTCCACCATGTGGGATTGAGAATGTCTTATGA 242529 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGA-CCTACCTGTGC 138301 | ||| | |||||| |||||||| || | | | || || || | || |||| || Sbjct 242530 AGATTCAAATGACAAACATCTGCTCCTAAATATCCAGGAGATG-TATATCCAACCTAAGC 242588 Query 138302 ATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACAT-A 138360 ||| | ||| || ||||| | ||| || ||| |||| ||||||| | ||| || | Sbjct 242589 ATTCATATTGGCTCCATCCATATAAACTAAACCTCCATGCTCATGAATTA-ATTAAATAA 242647 Query 138361 TCTGTCTGATGTTTG--TTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACA 138418 ||| ||| |||||| |||| | || |||| ||| |||||||||||||||||||| || Sbjct 242648 TCT-TCT-TTGTTTGATCTTCATAGACTCCATAAGTTGATGGATATGTAATCATAATGCA 242705 Query 138419 TG----AGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGT 138474 || ||| || || | | |||| |||||| | || ||| || | || | | Sbjct 242706 TGCCAAAGACTTTTCAT-TTTCTTTGAT---TTTCTTATTTAAATCATTCAAATCAACAT 242761 Query 138475 TGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAG 138534 ||||| | |||| || || |||||| | | ||| || | || || ||||| Sbjct 242762 AACCATC--TACCACA-TTAACTGGTACAACAGTTAATCCAGCAAGAACAGCTGAAGCAG 242818 Query 138535 GATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATC 138594 ||||||| ||||| || || ||| || | ||||| ||||| | | | ||| || Sbjct 242819 GATTAGTACCATGAGCAGATATTGGAATTAAACATATGTTTCTATCCTTTTGTCC--ATT 242876 Query 138595 CTTGA--TGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTT 138652 | ||| |||||| | ||| ||| | |||| || || || | | || ||| Sbjct 242877 CATGATGTGATATTTTCTGATGCATAATAAACCTGAGTATTCCCCTTAAGCACCACTGTT 242936 Query 138653 AGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTCATC 138712 ||| ||| || | || || | ||| ||||| ||||||||||| | | | || Sbjct 242937 AGGCATTAAGGACACAGCTTCCATTTGTGTAATATCGCATAACCATTTTTCAACATTTTC 242996 Query 138713 TATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGCAAA 138772 ||| | || ||| || || || ||| | | ||||||| | || || Sbjct 242997 AGTTAATTCTTAATAGCCTTAAGTGCAAGACAAAGGGGAAAAGGGATGCAATTGGGAGAA 243056 Query 138773 TTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACTACC 138832 | ||| |||| ||||||| || | | || ||| | ||||||||| |||||||| Sbjct 243057 TCCTTAAAATGAGACAGGCAACATGAAAGAAGTTGGATTCAATTTCATTGTACAACTACC 243116 Query 138833 AAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGAGCATAACTCATAGATATATCT 138892 | || || |||| || |||||||| ||| || | | ||| | | ||| ||||| Sbjct 243117 TAATGAAATCATAGACTTAGTTAATGAGACATCCTTCTATCTTAAATAGTTGATGTATCT 243176 Query 138893 CATCATGTCAGTTTCACTGTG 138913 || ||| ||||||||||| || Sbjct 243177 CAACATTTCAGTTTCACTATG 243197 Score = 134 bits (148), Expect = 2e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 139847 ATATGCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGC 139906 || ||| || | |||||| ||| |||| ||||||||||| || |||| || || || | Sbjct 244134 ATTTGCCAAGAACATTGCTTCTCCTGCAGCAGTTGCTTCGTCCAATAATGAGGCATTAGA 244193 Query 139907 TATTGGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCT 139966 || | ||||| | ||| ||||| | || |||||||||| | |||||| | ||| Sbjct 244194 TACATCCATACCTGTTAATTCAGTGATTACAGTCTGGTAATTGAGAAGAGCTTCAAGTCT 244253 Query 139967 TCCCTGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAG 140026 |||||||| |||||||||| ||||||||| || ||||| ||||| | || | ||||| Sbjct 244254 CCCCTGAGAAATCTCAGCTTAATAGGGAGTATAGGATGTATACCATCCTGGGTCTTCAAG 244313 Query 140027 AACGTTTCGCTGTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 || |||| | ||||| ||||| || ||||| || ||||| ||||| Sbjct 244314 TACATTTCTCAAGATGACATACGGTGTGTGAGTACCATAATAGCCTTGGCCTAT 244367 >seq202 Length=539671 Score = 159 bits (176), Expect = 4e-34 Identities = 494/744 (66%), Gaps = 29/744 (4%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| |||||||||||| |||||||| || ||||||||||| || ||||||||||||| Sbjct 218023 ACAGCAATAGGACCTAATCCAGGACCACCTCCTCCATGTGGGATGGAGAATGTCTTATGG 217964 Query 138243 AAATTTAGATGACATACATCTGCACC---ATAGTCACATG-GTTTTGCTAGACCTACCTG 138298 | ||| | || || ||||| || || ||| || || | | | || || || |||| Sbjct 217963 AGATTCAAGTGGCAAACATCAGCTCCCAAATA-TC-CAGGAGATGTG-TA-TCCAACCTA 217908 Query 138299 TGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACA 138358 ||||| | ||| || ||||| | ||| || || |||| ||||||| | ||| | Sbjct 217907 GGCATTCATATTGGCTCCATCCATATACACTAATCCTCCATGCTCATGAATCA-ATTAAA 217849 Query 138359 T-ATCTGTCTGATGTTTG--TTTCAAATACACCATGAGTCGATGGATATGTAATCATAAT 138415 | |||| ||| |||||| |||| | || |||| ||| |||||||||||||||||||| Sbjct 217848 TAATCT-TCT-TTGTTTGATCTTCATAGACTCCATAAGTTGATGGATATGTAATCATAAT 217791 Query 138416 ACATG----AGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTA 138471 |||| ||| || || | | |||| |||||| | | ||| || | || | Sbjct 217790 GCATGCCAAAGACTTTTCAT-TTTCTTTGAT---TTTCTTATTCAAATCATTCAAATCAA 217735 Query 138472 TGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAG 138531 | || || | |||| || || |||||| | | ||| || | || || || Sbjct 217734 CATAACCGTC--TACCACA-TTAACTGGTACAACAGTTAATCCAGCAAGAACAGCTGAAG 217678 Query 138532 CAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTG 138591 |||||||||| ||||| || || ||| || | ||| | |||||| | | | ||| Sbjct 217677 CAGGATTAGTACCATGAGCAGATATTGGAATTAAACAAATATTTCTATCTTTTTGTCC-- 217620 Query 138592 ATCCTTGA--TGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGC 138649 || | ||| |||||| | ||| ||| | |||| || || || | | || Sbjct 217619 ATTCATGATGTGATATTTTCTGATGCATAATAAACCTGTGTATTCTCCTTAGGCACCACT 217560 Query 138650 GTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCATTTCTGTAAGTC 138709 |||||| ||| || | || || || ||| ||||| ||||||||||| | | | Sbjct 217559 GTTAGGCATTAAGGACACAGCTTCCAATTGTGTAATATCGCATAACCATTTTTCAACATT 217500 Query 138710 ATCTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGTATGTGGATGCACGTTGGC 138769 ||| | | | || ||| || || || ||| | | |||||||| | || Sbjct 217499 TTCTGTCAATTCTTAATAGCCTTAAGTACAAGACAAAGGGGAAAATGGATGCAATTGGGA 217440 Query 138770 AAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATTTAGTTTCATTGTGCAACT 138829 ||| ||| |||| ||||||| || | | || ||| | |||||| || ||||| Sbjct 217439 GAATCCTTAGAATGAGACAGGCAACATGAAAGAGGTTGGATTCAATTTCATAGTACAACT 217380 Query 138830 ACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTTAGAGCATAACTCATAGATATA 138889 ||| | || || |||| || |||||||| |||||| | | ||| | | ||| || Sbjct 217379 ACCTAATGAAATCATAGACTTAGTTAATGAGACATCTTTTTATCTTAAATAGTTGATGTA 217320 Query 138890 TCTCATCATGTCAGTTTCACTGTG 138913 ||||| ||| ||||||||||| || Sbjct 217319 TCTCAACATTTCAGTTTCACTATG 217296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578993355476440