Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq613 96.9 4e-15 seq697 84.2 3e-11 >seq613 Length=410769 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 64930 GAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTA 64989 ||||| |||||| |||||||| | || || | |||| | ||| ||||| | | Sbjct 197917 GAAACCTATTCACTTTTGATTGATACCTATATAACCGATGAAAATGAGAAGAACTATCTT 197858 Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 | | ||||| | | ||| || |||| | ||||| || | ||||||||||||||| Sbjct 197857 CTCCATGCCATTGATAATGTGCCTGTTATTCAAAAGAAAGCAATGTGGGCAATGAAATGG 197798 Query 65050 TTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGT 65109 || | | || | || || || || | | |||| ||||| ||| || || Sbjct 197797 ATTAATAATAA---TGATTCATTTGCTGAAAGATTGATTGCCTTTGCTGCTGTTGAAGGC 197741 Query 65110 ATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCA 65169 |||||||| || || ||||| || ||||| | |||| | || || | | |||||| Sbjct 197740 ATCTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATCAAAAAAAGATCATTGATGCCA 197681 Query 65170 GGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 || || ||| ||||||||| | ||||| ||||||| |||||||| Sbjct 197680 GGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTCCA 197634 >seq697 Length=319182 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 64930 GAAACATATTCAAAATTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTA 64989 ||||| ||||| ||||| |||| ||||| | |||| | ||||||||| | | Sbjct 147050 GAAACTTATTCTCTTTTGATAGACACTTACATAACCGATGAAAATGAAAAGAACTATCTT 147109 Query 64990 TTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGG 65049 | | || || | | ||| || |||| | |||||||| | ||||| ||||||||| Sbjct 147110 CTACATGCAATTGACAATGTGCCTGTTATTCAAAAGAAGGCAATGTGGGCTATGAAATGG 147169 Query 65050 TTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGT 65109 | | || | || || || ||| | | |||| ||||| ||| || || Sbjct 147170 ATAAATGAGAATGAT---TCATTTGCTGAGAGATTGATTGCCTTTGCTGCTGTTGAAGGC 147226 Query 65110 ATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCA 65169 |||||||| || || ||||| || || || | |||| | || || | | ||||| Sbjct 147227 ATCTTCTTTTCTGGTTCATTTTGTGCCATATTTTGGATCAAAAAAAGATCATTGATGCCT 147286 Query 65170 GGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 || || ||||||||||||| | ||||| | ||||| |||||||| Sbjct 147287 GGACTCACCTTCTCAAATGAATTAATTTCAAGGGATGAAGGTCTCCA 147333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596564402387360