Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq697 212 1e-49 seq613 181 2e-40 seq99 147 4e-30 seq114 120 6e-22 seq680 118 2e-21 seq36 116 7e-21 seq71 87.8 4e-12 >seq697 Length=319182 Score = 212 bits (234), Expect = 1e-49 Identities = 496/742 (67%), Gaps = 22/742 (3%) Strand=Plus/Minus Query 49578 AATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTT----CTCC 49633 || ||||| | || ||| | ||||| ||||| || | ||| ||| || || | || Sbjct 147591 AAAGATATCATATCCATCCACTCAAAAGGATTCTTCGAATTGTAA-ATCTTGGGAGCACC 147533 Query 49634 TATCAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACA 49693 |||| || ||| |||||||| ||||||||||||| ||||| | ||| || | | Sbjct 147532 ---CAATGCAAATATCAATCTATCTGCTACAAATTCAATATATTATTTCATCAAATTGGA 147476 Query 49694 ATTCATACCCAATAATTTAAA-TGGTAATGCATCATCAATAAATTCtttttctatttcta 49752 |||||| || ||||| || || ||||| || ||| ||| ||||||||||| ||||| | Sbjct 147475 ATTCATTCC-AATAAGTTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTCAA 147417 Query 49753 cagcttgtttaattatcataattatattattttttga-taatttatatttaatatgattc 49811 |||| | ||||| | || | ||| ||| | | | |||| |||| | || || | Sbjct 147416 CAGCCGATGATATTATT-TCATGA-ATTCTTTGATTACTCATTT-TATTAACTAA-ATGC 147361 Query 49812 gcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTA 49871 || | | ||| ||||| || ||||| | ||| || ||||| || || |||||||| Sbjct 147360 TTGTACAGGAGACAAGCAAAGTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTT 147301 Query 49872 CTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTA 49931 || || | ||| ||||| ||| ||| ||||| | ||||||||| | ||| | Sbjct 147300 GAGAAGGTGAGTCCAGGCATCAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAA 147241 Query 49932 CTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAAT 49991 | ||||||||| || || || ||| ||||| || || | ||| | |||| | ||| Sbjct 147240 CCAGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATCAATCTCTCAGCAAA--TGAAT 147183 Query 49992 --TTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 || |||| || |||| || |||||||| ||| || |||| ||| ||| | || Sbjct 147182 CATTCTCATTTA---TCCATTTCATAGCCCACATTGCCTTCTTTTGAATAACAGGCACAT 147126 Query 50050 TTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTA 50109 | || || || | | | | || ||||||| || | Sbjct 147125 TGTCAATTGCATGTAGAAGATAGTTCTTTTCATTTTCATCGGTTATGTAAGTGTCTATCA 147066 Query 50110 ATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTC 50169 | | |||||| |||| ||||||| | |||||| ||||||| |||| |||||| || Sbjct 147065 AAAGAGAATAAGTTTCTGAATGTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATC 147006 Query 50170 TTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATAC 50229 | ||||| | | |||||| | | |||| || | || || ||| ||||||| Sbjct 147005 TGGCTTCAGGCACTTAAACTTCTGTACAGAACTATTAGGCCAAGTTTTCATTCACAATAC 146946 Query 50230 CATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTA 50289 ||||| ||||| || || |||| || || ||||||||||| ||||||| | || | | Sbjct 146945 CATCACTGGCTGCAAAAAAGGCTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAA 146886 Query 50290 AATTTTCCCAAGATTCAAGATC 50311 ||||||||| || |||||| Sbjct 146885 GCTTTTCCCAATCTTTAAGATC 146864 >seq613 Length=410769 Score = 181 bits (200), Expect = 2e-40 Identities = 489/745 (66%), Gaps = 18/745 (2%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATA-ATATTTTT-- 49629 ||| ||| ||||| | || ||| | ||||| ||||| || | ||| || || || Sbjct 197371 CTTATAAGGATATCATATCCATCCATTCAAAAGGATTCTTTGAATTGTAGATCTTAGGAG 197430 Query 49630 CTCCTATCAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATT 49689 |||| |||| || ||| |||||||| || || ||||||| ||||| | ||| || | Sbjct 197431 CTCC---CAATGCAAATATCAATCTATCTGCAACGAATTCAATATATTATTTCATCAAAT 197487 Query 49690 CACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctattt 49749 ||||||| || | || || || |||||| || ||| || ||||||||||| |||| Sbjct 197488 TGGAATTCATTCCAATTAGTTCAACTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTT 197547 Query 49750 ctacagcttgtttaattatcataattatattattttttgat-aatttatatttaatatga 49808 | ||||| ||| || | || | | || | | || |||| | ||||| Sbjct 197548 CAACAGCAGAAGAAATGATT-TCATGAACTCGTTGAATACTCAACTTATTAATCATATGT 197606 Query 49809 ttcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCA 49868 || || | | ||| ||||| || ||||| | ||| || || || || || |||||| Sbjct 197607 TTG---TAAAGAAGACAAGCAAAGTCTGTATGGAGACCTTCATCTCTTGAAATTAATTCA 197663 Query 49869 TTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA 49928 || ||| || | ||||||||| ||| ||| ||||| | ||||||||| | ||| Sbjct 197664 TTTGAAAAGGTGAGTCCTGGCATCAATGATCTTTTTTTGATCCAAAATATAGCACAAAAT 197723 Query 49929 CTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATT 49988 || ||||||||| || || || ||| ||||| || || | |||| | |||| | Sbjct 197724 GAACCAGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATCAATCTTTCAGCAAA--TG 197781 Query 49989 AAT--TTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTA 50046 ||| |||| || |||| ||| || || ||||| |||||| |||| ||| ||| | Sbjct 197782 AATCATTATTAT-TAAT--CCATTTCATTGCCCACATTGCTTTCTTTTGAATAACAGGCA 197838 Query 50047 TATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNA 50106 ||| || || || | | | | || || |||| | Sbjct 197839 CATTATCAATGGCATGGAGAAGATAGTTCTTCTCATTTTCATCGGTTATATAGGTATCAA 197898 Query 50107 TTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATT 50166 | || | ||||| |||| || || | ||||||||||||| |||| ||| || Sbjct 197899 TCAAAAGTGAATAGGTTTCTGAGTGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGC 197958 Query 50167 GTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAA 50226 ||||||||| | | || ||||| | | |||| || | || || ||| |||| Sbjct 197959 ATCTTGCTTCAGGAACTTGCACTTCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAA 198018 Query 50227 TACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTT 50286 |||||||| |||||| ||||| || | || ||||||||||| || ||||||| | Sbjct 198019 TACCATCACTTGCTGCAAAGAAGGCAAGTACATATTTAATAAAGTGCTTTTCATCGGCAG 198078 Query 50287 TTAAATTTTCCCAAGATTCAAGATC 50311 | | ||||||||| || |||||| Sbjct 198079 TGAGTTTTTCCCAATCTTTAAGATC 198103 >seq99 Length=47800 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | || ||||| || | ||| | || || |||| |||||||| Sbjct 7405 ATTCCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATCT 7346 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| | |||| || |||| || || ||||| || | ||| | || ||||||| Sbjct 7345 GAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGT 7286 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||||| |||||| || ||| |||| ||||| | ||| Sbjct 7285 GGGATTCCTTCCTTATCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCA 7226 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||| |||||||||||||| | |||||| |||||| Sbjct 7225 ACATCAAGAGTGATGGTTTTTCCAGTTAATGTTTTTACAAATATTTGCATT 7175 >seq114 Length=584889 Score = 120 bits (132), Expect = 6e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| || | ||||||||||| | ||| | || || |||| |||||||| || Sbjct 475551 ACCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCCTTTTAGATGTTATAATCGGA 475492 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | |||| |||||||| || |||||||| || ||||| | || ||| || || Sbjct 475491 AAGAGTTCTTCCATCCTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCGGGAGG 475432 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| |||| || || || ||| | |||| ||| || | || || Sbjct 475431 GATTCCTTCTTTGTCTTAGATCTTTGCCTTAACAGCATCGATAGTATCAGATGGCTCGAC 475372 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 || || || ||||| || || || | || |||| ||| || | ||| ||||| Sbjct 475371 ATCGAGTGTGATGGTCTTGCCCGTGAGGGTCTTAACAAAAATTTACATATTATT 475318 >seq680 Length=357438 Score = 118 bits (130), Expect = 2e-21 Identities = 176/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 192293 TTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAG 192352 || || ||| ||| ||||||||| | | ||||||||||| | ||| | ||||| Sbjct 173403 TTGTTGGTTCCATACCACCACCTCTTAATCTCAATACTAAATGGAGAGTTGATTCTTTTT 173462 Query 192353 AGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC 192412 | ||||||||||| || | ||||| | | || || | ||| || || || || || |||| Sbjct 173463 AAATATTATAATCTGAAAGTGTTCTTCCGTCTTCAAGTTGCTTTCCTGCGAAAATCAATC 173522 Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 192472 | | || |||||| || |||||||||||||||| || || || || | || | Sbjct 173523 TTTATTAATCAGGAGGAATTCCTTCTTTATCTTAAATCTTGGCCTTGACTGCATCAATTG 173582 Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 ||||| | || || || ||||| ||||| || || || | ||||||| ||| || | Sbjct 173583 TGTCTGATGGCTCAACATCAAGAGTGATGGTCTTTCCCGTAAGGGTTTTAACAAAAATTT 173642 Query 192533 GCATTTTATT 192542 ||| ||||| Sbjct 173643 ACATATTATT 173652 >seq36 Length=667686 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || ||||| || | ||||| ||||| | ||||||||||| || Sbjct 163412 ACCACCTCTTAATCTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATCTGA 163471 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | | || || | ||| || || ||||| || ||||| | |||||||||||| Sbjct 163472 AAGAGTTCTTCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGTGG 163531 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||||||||||| || ||| || ||| | || | ||||| | || || Sbjct 163532 AATTCCTTCTTTATCTTAAATCTTAGCCTTGACAGCATCAATGGTGTCTGAAGGCTCCAC 163591 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 || || || || || || || || | ||||||| ||| || | ||| |||| Sbjct 163592 ATCAAGTGTGATAGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACATAATATT 163645 >seq71 Length=215326 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||| || || | ||||| | |||| || |||| || ||||||||||| | ||| Sbjct 119258 ATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCAGCAAAGATAAGTCTT 119317 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 | || |||||| || |||||||| || ||||| |||||| || ||| | || | Sbjct 119318 TATTAATCAGGGGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTG 119377 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || ||||| || || || || || | ||| || | || || | | Sbjct 119378 TCAGATGGTTCAACATCAAGAGTGATAGTCTTTCCTGTGAGTGTCTTGACGAAGATTTAC 119437 Query 192535 ATT 192537 ||| Sbjct 119438 ATT 119440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984471208285950