Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq71 102 5e-17 seq247 84.2 1e-11 >seq71 Length=215326 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| |||| ||||| ||||| ||| ||||| | |||||||||||| | Sbjct 119211 TTCCTCCTCTCAATCTCAAGACCAAGTGAAGGGTTGATTCCTTTTAAATGTTATAGTCTG 119270 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| || | || |||||| || ||||| |||| || | || | | Sbjct 119271 AAAGTGTTCTTCCATCTTCTAATTACTTTCCAGCAAAGATAAGTCTTTATTAATCAGGGG 119330 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | ||||| ||||| | | || | ||| | || | Sbjct 119331 GGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTGTCAGATGGTTCAA 119390 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| ||||| ||||| || ||||| | ||| Sbjct 119391 CATCAAGAGTGATAGTCTTTCCTGTGAGTGTCTTGACGAAGATTTACAT 119439 Score = 84.2 bits (92), Expect = 1e-11 Identities = 171/252 (68%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 34729 ACATATGCATA--TCCAATCATTT-CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCT 34785 ||||||| ||| | ||||||| ||||| ||||| || | |||| ||||| ||| Sbjct 118732 ACATATGGATAGTTTAAATCATTAGCCTCCTCTCAATCTTAAAACCAAGTGAAGTGTGGA 118791 Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||| | |||||||||||| || || | | | || || | || |||||| ||||| Sbjct 118792 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCGAA 118851 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| |||| ||| | || | || | || ||||| || | ||||| || || | Sbjct 118852 GATAAGTCTTTGTTAATCGGGTGGGATTCCTTCCTTATCTTAGATTTTAGCCTTAACAGC 118911 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | || ||||||| || || || ||||| || || ||||| || Sbjct 118912 ATCAATAGTGTCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCTGTAAGTGTCTTGAC 118971 Query 34966 AAAGATCTGCAT 34977 ||||| | ||| Sbjct 118972 GAAGATTTACAT 118983 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| ||||| || | ||| | ||||| ||| ||||| | |||||||||||| | Sbjct 119669 TTCCTCCTCTCAATCTTAAGACTAAGTGAAGAGTGGATTCCTTTTAAATGTTATAGTCTG 119728 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || || | || || || |||||||| |||| ||| | || | | Sbjct 119729 AAAGTGTTCTTCCGTCTTCTAATTATTTACCAGCGAAGATAAGTCTTTGTTAATCGGGTG 119788 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | ||||| ||||| | | || | ||| | || | Sbjct 119789 GGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACAGCATCAATTGTGTCAGATGGTTCAA 119848 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || || ||||| ||||| |||||||| || || | ||| Sbjct 119849 CATCAAGAGTGATTGTTTTTCCTGTGAGTGTCTTTACGAAAATTTACAT 119897 >seq247 Length=527326 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || |||||||| || || || | | |||| |||| ||||||||| ||||| Sbjct 406033 TCCTTTTGGATGTTATAATCTGAAAGAGTTCTTCCATCTTCCAATTGCTTTCCAGCGAAA 405974 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | || || || || | || | || |||||||| | || ||| || || | Sbjct 405973 ATTAATCTTTATTGATCGGGAGGGATTCCTTCCTTGTCCTAGATCTTTGCCTTAACAGCA 405914 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| | ||| ||||| | || |||||||| |||||||||||||| ||| Sbjct 405913 TCGATAGTGTCAGATGGCTCAACATCGAGTGTGATGGTCTTACCCGTGAGGGTCTTAACA 405854 Query 34967 AAGATCTGCAT 34977 || || | ||| Sbjct 405853 AAAATTTACAT 405843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690033341443