Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq202 96.9 4e-15 seq44 93.3 5e-14 seq580 87.8 2e-12 >seq202 Length=539671 Score = 96.9 bits (106), Expect = 4e-15 Identities = 126/167 (75%), Gaps = 7/167 (4%) Strand=Plus/Plus Query 193431 GGTCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTT-CAGGAATGGCCCAAAAAGG 193489 ||||| ||| | || || |||| || || || ||||| ||| |||| | |||| || Sbjct 532060 GGTCA-TTAAGAATCCCACAAATCGGAGACAAGTTTTGCAGCAGACATGGAC-AAAAGGG 532117 Query 193490 AACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACA-GCTT-CAGGTATGGTA 193547 ||||||||| |||| |||| |||||||||| | || ||||| ||| ||| || Sbjct 532118 AACTTGTGGAATGACTTATCGACAAGAAGATTTACC--TTACACTCTTGTAGGCATTTCT 532175 Query 193548 CCAGATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCAT 193594 |||||| | | ||| |||||| ||||||||||||| ||||||||||| Sbjct 532176 CCAGATTTAACTATCAATCCACATTGTATTCCATCAAGAATGACCAT 532222 >seq44 Length=260781 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 51957 ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 52016 ||||||| | |||||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 206282 ACATTTAGATTGAATTTGTCTGTGTGTACTCCATACAATGCAGATTTCGATGGAGATGAA 206341 Query 52017 ATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAATT 52060 |||||| | ||||||||||||||||||| | | | || ||||| Sbjct 206342 ATGAATATGCATGTTCCTCAATCATATGAAACAATAGCAGAATT 206385 >seq580 Length=425387 Score = 87.8 bits (96), Expect = 2e-12 Identities = 337/512 (66%), Gaps = 37/512 (7%) Strand=Plus/Plus Query 168576 GATATAGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGT 168635 |||| || ||||| | ||| | | ||||| | || |||| ||| ||| |||| Sbjct 402465 GATAAGGGAGTTAAGATATGGGAAGGAAATGGCACCCGAGAATATTTGGATACCATTGGT 402524 Query 168636 TT-TACCGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGC 168694 || || | | ||| | ||| ||| ||||| ||| | ||||||||||||||||||||| Sbjct 402525 TTATAAC-ATAGATAGGAACATGACTTAGGACCAGTCTATGGATTTCAATGGAGACATTT 402583 Query 168695 AGGAGCTCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAG 168754 |||||| |||||| || ||| | || ||||| || ||||||| | |||||| Sbjct 402584 TGGAGCTAAATATAAGGATTGTTAGACTGATTATTCCAATTAAGGAGTGG----ATTAAG 402639 Query 168755 TCAA----ACTATA-AATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAAT 168809 | || | |||| ||| | | | |||||||| || | |||||||||| | |||| Sbjct 402640 TGAAGGAGATTATACAATTACTGA-AAAACAATCCAGATAGTAGAAGAATAAT-ATTATC 402697 Query 168810 AG-TTGGGATGTACCA--CAACTTGATA-AAATGGTTCTTCCCCCTTGTCACACTTTAGT 168865 || |||| || ||| | || | | |||||| | || || ||||| | | | Sbjct 402698 AGCTTGGAAT---CCAATTGATTTAAAATAAATGGCATTGCCACCATGTCA---TGTGAT 402751 Query 168866 G---CAATTTTATGTAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGC 168922 | |||| | ||| || ||| ||| | || ||| | ||||| | |||||| Sbjct 402752 GTCATAATTCTTTGT--GGCAAATGGCAAATTGAG-TTGCATGATGTATTAGAGATCATG 402808 Query 168923 TGATTTAGGATTAGGAGTACCTTATAATATTGGATTTTATTCATTTTTAAC--ACTTGT- 168979 ||| || || || ||| | || | ||||||| |||| |||| | || || ||| Sbjct 402809 TGACTTTGGTTTGGGAATTCCCTTCAATATTGCTAGTTATGCATTGCTCACTTACATGTT 402868 Query 168980 -GCTAAGTAAATGGTGTAATTTGACGCCTGGAAAGTTTATTCATACTTTTGGAGATGTTC 169038 || ||| || || ||||||| ||| | ||| ||||| ||| |||||| || Sbjct 402869 GGCAAAGGAA----TGCAATTTGAATTTGGGAGAATTTGTTCATGTTTTAGGAGATACTC 402924 Query 169039 ACGTGTATTCAAACCATGTTGAACCTTTAAAG 169070 | | ||| || ||||| || |||||||| Sbjct 402925 ATATTTATAGTAATCATGTGGAGGCTTTAAAG 402956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635172066015160