Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq44 89.7 6e-13 seq202 87.8 2e-12 seq580 82.4 1e-10 >seq44 Length=260781 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 50407 ACATTTAAAATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 50466 ||||||| | ||||||| || || || |||| ||||| ||||| ||||| |||||| Sbjct 206282 ACATTTAGATTGAATTTGTCTGTGTGTACTCCATACAATGCAGATTTCGATGGAGATGAA 206341 Query 50467 ATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAATT 50510 |||||| | ||||||||||||||||||| | | | || ||||| Sbjct 206342 ATGAATATGCATGTTCCTCAATCATATGAAACAATAGCAGAATT 206385 >seq202 Length=539671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/167 (74%), Gaps = 7/167 (4%) Strand=Plus/Plus Query 192984 GGTCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGG 193042 ||||| ||| | || || |||| || || || ||||| || |||| | |||| || Sbjct 532060 GGTCA-TTAAGAATCCCACAAATCGGAGACAAGTTTTGCAGCAGACATGGAC-AAAAGGG 532117 Query 193043 AACTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACA-ACTT-CAGGTATGGTA 193100 ||||||||| |||| |||| |||||||||| | || ||||| ||| ||| || Sbjct 532118 AACTTGTGGAATGACTTATCGACAAGAAGATTTACC--TTACACTCTTGTAGGCATTTCT 532175 Query 193101 CCAGATATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCAT 193147 |||||| | | ||| |||||| |||||||||| || ||||||||||| Sbjct 532176 CCAGATTTAACTATCAATCCACATTGTATTCCATCAAGAATGACCAT 532222 >seq580 Length=425387 Score = 82.4 bits (90), Expect = 1e-10 Identities = 115/159 (72%), Gaps = 8/159 (5%) Strand=Plus/Plus Query 171730 AGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAA 171789 ||| | ||| ||| ||||| ||| | ||||||||||||||||||||| || ||| || Sbjct 402534 AGATAGGAACATGACTTAGGACCAGTCTATGGATTTCAATGGAGACATTTTGGAGCTAAA 402593 Query 171790 TATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATT 171849 |||| || ||||| || ||||| | ||||||||| ||||||| || | Sbjct 402594 TATAAGGATTGTTAGACTGATTATTCCAATTAAGGAGTGG----ATTAAGTGAAGGAGAT 402649 Query 171850 AATAC-TTTAC---AAAACAACCCAGAAAGTAGAAGGAT 171884 |||| |||| ||||||| ||||| |||||||| || Sbjct 402650 TATACAATTACTGAAAAACAATCCAGATAGTAGAAGAAT 402688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628525723921920