Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq180 104 4e-17 seq43 87.8 3e-12 >seq180 Length=553472 Score = 104 bits (114), Expect = 4e-17 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 142968 GATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTT 143027 ||| | ||||| | | || |||||| ||| ||||| || || ||||| ||| | Sbjct 268759 GATGAGGATGAATTTAAAACATGGAAATAAAGGAATGATCCAGTATTACATATTGAATTG 268700 Query 143028 AGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATA 143087 | | |||||| || ||| || ||||| || || | || ||||| | || || ||| Sbjct 268699 CGAAAATGGGCAGACTGTTTACTGATAGCTCCTCTATCAGCCAATACTATGGCTAAGATA 268640 Query 143088 GCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAA 143147 || || || |||| ||||||||| ||||| | | | ||||| |||||| || ||| Sbjct 268639 GCTAATGGCTTATGTGATAATTTATTAACAAATGTTGCCAGAGCATGGGATTACAAGAAA 268580 Query 143148 CCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAA 143207 ||| | ||||| ||| || ||||||| | |||| || |||| || ||||||||| Sbjct 268579 CCTATGATTTTAGCTCCTGCAATGAATACTATGATGTATGAGAATCCAATCACAGAAAAA 268520 Query 143208 CATAT 143212 || || Sbjct 268519 CAAAT 268515 >seq43 Length=260901 Score = 87.8 bits (96), Expect = 3e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 216460 AAGGTAGAAAGAGAGGAGGTGGTATCAAATTTGGTGAGATGGAAAGAGATTGTCTCATCG 216519 |||||||||||| ||||| ||||||| ||| |||||||||||||||||| |||||| | Sbjct 151144 AAGGTAGAAAGAAGGGAGGAGGTATCAGATTGGGTGAGATGGAAAGAGATGCTCTCATTG 151085 Query 216520 CTCACGGGGCTGCAAATACTATTACTGA 216547 |||| || | ||| || ||||| ||| Sbjct 151084 CTCATGGAGTTGCGTATTGTATTAATGA 151057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903403329029920