Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq613 176 1e-38 seq697 150 4e-31 seq44 111 4e-19 seq358 87.8 4e-12 seq65 87.8 4e-12 >seq613 Length=410769 Score = 176 bits (194), Expect = 1e-38 Identities = 505/767 (66%), Gaps = 21/767 (3%) Strand=Plus/Minus Query 131522 GATATTGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTT 131581 ||| || | |||||||||||| | || ||||||| | ||| || | || ||| Sbjct 198103 GATCTTAAAGATTGGGAAAAACTCACTGCCGATGAAAAGCACTTTATTAAATATGTACTT 198044 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTA-ATTTCATTCA 131640 || ||||| || | ||||||||| ||||| | |||||| |||| | | ||| | Sbjct 198043 GCCTTCTTTGCAGCAAGTGATGGTATTGTGAATGAAAA-CTTGGCCCAATAGTTCTGTAC 197985 Query 131641 AGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTAT 131700 |||| | | ||||||||| || || ||||| |||| || ||| | || || Sbjct 197984 AGAAGTGCAAGTTCCTGAAGCAAGATGCTTCTATGGATTTTAAATAGCTATGGAGAACAT 197925 Query 131701 TCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAA 131760 ||| || | |||||| | |||||||| | | | | ||||| |||| || || Sbjct 197924 TCACTCAGAAACCTATTCACTTTTGATTGATACCTATATAACCGATGAAAATGAGAAGAA 197865 Query 131761 TAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTAT 131820 | | | |||| | |||| | |||| ||| ||||||||||| ||||| || Sbjct 197864 CTATCTTCTCCATGCCATTGATAATGTGCCTGTTATTCAAAAGAAAGCAATGTGGGCAAT 197805 Query 131821 TAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGT 131880 ||||||||| | || || | | ||| || |||| | | || |||||| ||| Sbjct 197804 GAAATGGATTAATAATAAT---GATTCATTTGCTGAAAGATTGATTGCCTTTGCTGCTGT 197748 Query 131881 TGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATT 131940 |||||| || |||||||| ||| | || |||||||| |||||| | || || | ||| Sbjct 197747 TGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATCAAAAAAAGATCATT 197688 Query 131941 GATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGA 132000 |||||| |||||| | || || ||| |||| || || |||||||||| | ||||| || Sbjct 197687 GATGCCAGGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTCCATACAGA 197628 Query 132001 ATTTGCTATATTAATCTATAGAAA-ATTTGCTGATAAACTTG---ATGAAAATAAT--AT 132054 ||||| | | ||| || ||| || || | | || ||| || || | | || Sbjct 197627 CTTTGC--TTGTCTTCTTTACAAACATATGATTAATAAGTTGAGTATTCAACGAGTTCAT 197570 Query 132055 TAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCC 132114 ||| | || | || ||||| || || || || || || | |||||||| || Sbjct 197569 GAAATCATTTCT----TCTGCTGTTGAAATTGAAAAAGAATTCATCAGTGAAGCTTTACC 197514 Query 132115 --TTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCT 132172 ||| | | ||||| |||||| | | | ||||| | || |||||||||||||| Sbjct 197513 AGTTG--AACTAATTGGAATGAATTCCAATTTGATGAAATAATATATTGAATTCGTTGCA 197456 Query 132173 GATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACA 132232 ||| | || || | | ||| | | ||||| || || | | || || | | | Sbjct 197455 GATAGATTGATATTTGCATTGGGAGCTCCTAAGATCTACAATTCAAAGAATCCTTTTGAA 197396 Query 132233 TGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAAG 132279 |||||||| || || | |||||||||| || ||||||||||| Sbjct 197395 TGGATGGATATGATATCCTTATAAGGTAAAACTAATTTCTTCGAAAG 197349 >seq697 Length=319182 Score = 150 bits (166), Expect = 4e-31 Identities = 503/770 (65%), Gaps = 27/770 (4%) Strand=Plus/Plus Query 131522 GATATTGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTT 131581 ||| || | ||||||||||| | || ||||||| ||||| || | || || Sbjct 146864 GATCTTAAAGATTGGGAAAAGCTTACAGCTGATGAAAAGCATTTTATTAAGTATGTCCTA 146923 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTA-ATTTCATTCA 131640 || || || || | |||||||| ||||| | |||||| |||| | | | ||| | Sbjct 146924 GCCTTTTTTGCAGCCAGTGATGGTATTGTGAATGAAAA-CTTGGCCTAATAGTTCTGTAC 146982 Query 131641 AGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTAT 131700 |||| || | | ||||||| | || || || |||| || || | ||| ||| Sbjct 146983 AGAAGTTTAAGTGCCTGAAGCCAGATGCTTTTATGGATTTTAAATAGCAATGGAAAATAT 147042 Query 131701 TCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAA 131760 ||| || | ||||| | ||||| || | | | | ||||| |||| || || Sbjct 147043 ACATTCAGAAACTTATTCTCTTTTGATAGACACTTACATAACCGATGAAAATGAAAAGAA 147102 Query 131761 TAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTAT 131820 | | | |||| | | || | |||| ||| ||||||| ||| |||||||| Sbjct 147103 CTATCTTCTACATGCAATTGACAATGTGCCTGTTATTCAAAAGAAGGCAATGTGGGCTAT 147162 Query 131821 TAAATGGATTCAAGA---TGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTG 131877 |||||||| | || |||||| ||| || ||| | | || |||||| Sbjct 147163 GAAATGGATAAATGAGAATGATTCA------TTTGCTGAGAGATTGATTGCCTTTGCTGC 147216 Query 131878 TGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGG 131937 ||||||||| || |||||||| ||| | || ||||| || |||||| | || || | Sbjct 147217 TGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCCATATTTTGGATCAAAAAAAGATC 147276 Query 131938 ATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATAC 131997 |||||||||||||||| | || || ||| |||| || || || ||||||| | ||||| Sbjct 147277 ATTGATGCCTGGACTCACCTTCTCAAATGAATTAATTTCAAGGGATGAAGGTCTCCATAC 147336 Query 131998 TGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGA--AAATAAT--A 132053 || |||||| | | || | | || | | ||||| | | | ||| ||| | Sbjct 147337 AGACTTTGCTTGTCTCCTGTACAAGCATTTAGTTAATAAAATGAGTAATCAAAGAATTCA 147396 Query 132054 TTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGC 132113 | ||| || ||| | || || ||||| || || || || || |||| |||||| | | Sbjct 147397 TGAAATAA--TATCATCG--GCTGTTGAAATTGAAAAAGAATTCATTAGTGAAGCTCTAC 147452 Query 132114 C--TTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGC 132171 | ||| | || ||||| |||||| | | | ||||| | || |||||||| || || Sbjct 147453 CAGTTGAACTT--ATTGGAATGAATTCCAATTTGATGAAATAATATATTGAATTTGTAGC 147510 Query 132172 TGATCGTTTAAT-TAACCAACTTGGAT-ATTCCAAGATTTATAACACCCAAAACCCCTAT 132229 ||| | || || | || |||| | | |||||||||| || | | || || | | Sbjct 147511 AGATAGATTGATATTTGCA--TTGGGTGCTCCCAAGATTTACAATTCGAAGAATCCTTTT 147568 Query 132230 ACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAAG 132279 |||||||| || || | |||||||||| || ||||||||||| Sbjct 147569 GAGTGGATGGATATGATATCTTTGTAAGGTAAAACCAATTTCTTCGAAAG 147618 >seq44 Length=260781 Score = 111 bits (122), Expect = 4e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382 ||||| || | ||||| || ||||| | || |||| |||| |||||||| |||| Sbjct 206200 TGATTTCGTGTTATTCAACAGACAACCCACTCTACATAGAATGAGTATGATGGGACATAG 206259 Query 305383 AGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAA 305442 ||||| | | || | |||||| |||| ||| | || ||||| || || || Sbjct 206260 AGTCAGGATCCTCCCTTATTCTACATTTAGATTGAATTTGTCTGTGTGTACTCCATACAA 206319 Query 305443 TGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGAC 305502 ||| ||||| |||||||||||||||||||||||||| ||||||||| | | ||||| | Sbjct 206320 TGCAGATTTCGATGGAGATGAAATGAATATGCATGTTCCTCAATCATATGAAACAATAGC 206379 Query 305503 TGAATT 305508 ||||| Sbjct 206380 AGAATT 206385 >seq358 Length=483623 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 280181 GATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGCTA-TTGAACCAACATATTA 280239 ||| || || |||| ||| || || |||||||| | | | |||||||| ||||| Sbjct 46922 GATGATCATTTATTAAAGTATCTGGAAGATGATGGA-TAGATGGTTGAACCAGAGTATTA 46980 Query 280240 TGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGAATTGGAACAGGTTATTC 280299 || || ||||| ||||||| | | || ||||| ||| |||| ||||| || |||| || Sbjct 46981 TGTGCCTATTATTCCTATGAGTTTGGTCAATGGAGCTGAAGGTATTGGTACTGGTTGGTC 47040 Query 280300 TACATCTATCCCAATGTACAATCCAATTGA 280329 |||||| ||| || || ||||||||||| Sbjct 47041 TACATCAATCTAAAATTATAATCCAATTGA 47070 >seq65 Length=223177 Score = 87.8 bits (96), Expect = 4e-12 Identities = 905/1455 (62%), Gaps = 77/1455 (5%) Strand=Plus/Plus Query 278682 AATTTAAACAAGTATCTTTTGTTAATGGTATTAATACTTCAAAAGGTGGAAAACATGTTG 278741 ||||| |||| ||||| ||||||||| ||| |||||||| ||||||| ||||| Sbjct 196094 AATTTCAACATGTATCATTTGTTAATTCAATTTTCACTTCAAAGGGTGGAACTCATGTGA 196153 Query 278742 ATTATGTTCTTAATAAGATTGTGAAGAAGATTTCAGAGATAATTGAGAAGAAGGAAAAGA 278801 | |||| | |||| | | || | ||| |||| || ||| ||| | |||| | Sbjct 196154 CTCATGTGACTGATAAACTAATTTAGGAAATT-CAGAATGAAATGAAAAGCAATAAAAAA 196212 Query 278802 TTAAGGTA-----AAATCAAATAATATTA-----AAGAACACTTGTTTATATTTGTAAAT 278851 | | | | || | || ||||||| || || || | |||||||||||| Sbjct 196213 TACAAGCATTTAGAAGTGCAAAAATATTAGATCAAATAATCATTATGGATATTTGTAAAT 196272 Query 278852 TGTTTGATTATAAATCCTTCATTTGATTCGCAAACGAAAGA---TTTCCTAACTACGATT 278908 ||||| |||| ||||| |||||||||| || || ||||| ||| ||| | | || Sbjct 196273 TGTTTAATTAATAATCCAACATTTGATTCTCAGACAAAAGAGAATTTAACAACAAGGGTT 196332 Query 278909 A--------GCAGTAAATTCGGAAGTAAG-TTTGATTTTGGAGATAAGTTTTATCGTGAT 278959 | | | || | |||| || ||| | || || || || | | | Sbjct 196333 ACTGACTTTGGTGGAACTGATGAAGAAAAATTTAAGGTTACTGAGAAATTCTCTAAAGCA 196392 Query 278960 TTAGCAAAAACAGATATTATCAAGAATATTATC-AATACTCATAATTTTAAAGAGAATAA 279018 | || ||||||||||| | | ||| || |||| || || || || | | Sbjct 196393 CTCATTAAGACAGATATTATTGAAACTATATTCCAATAAGCAAAAGC---AAAAGCAGAT 196449 Query 279019 GCTAACAAATAAAAAGAATGAT--GGCAAGAAGACCAATAAATTATATGGTATTCCAAAA 279076 ||||| | | ||| ||| | || | ||||| | |||| || |||| ||| ||| Sbjct 196450 GCTAAATTAAATAAATAATTAAAAGGTACTAAGACAAGTAAACTACATGGAATTGAGAAA 196509 Query 279077 CTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTTCTTACT 279136 | |||||||| || |||||| || || || ||| |||| | | || Sbjct 196510 TTGGATGATGCTAATGATGCTGGAAAAAAGAATTCAGAATTCTGTACTTTGATATTGACA 196569 Query 279137 GAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGTGATAAA 279196 || |||||||| || | || || || ||||| || || |||| | |||| Sbjct 196570 GAAGGAGATTCAGCAAAAGCCTTGGCTATGGCTGGAATAGACATTGTTGGAAGAGATAGG 196629 Query 279197 TATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAATCACAACACAG 279256 ||||| |||||||| |||| || ||| || | |||| ||| | || | ||| Sbjct 196630 TATGGAGTATTTCCGTTAAAGGGAAAATTATTAAATG----TGAGAGAAGCGT----CAG 196681 Query 279257 GCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAATTTAAAACAAATATTGGGA 279316 | || ||| ||| | ||||| ||| | ||||| | |||| | ||| Sbjct 196682 TC-------AAACAAATAATGGATAATGAAGAAATCTAAAATTTGATTAAAATTATTGGA 196734 Query 279317 TTAGAGCAAGGTAAAAAATACAAAGATACATCAAGTTTACGATATGGTAAAATTATTATT 279376 ||| || ||| || | |||| ||| | | |||| |||||||| | | || ||| Sbjct 196735 TTACAGAAAGATAGAGAATATGGTGATTTAAAATCTTTAAGATATGGTTCAGTCATGATT 196794 Query 279377 TTGACAGACCAAGATTTAGATGGAAGTCACATT--AAAGGATTAATACTTAATTGGGTTG 279434 ||||||| ||||| | || || ||||||| ||||||||||| |||| | | Sbjct 196795 ATGACAGATTAAGATATTGACGG--GTCACATATCAAAGGATTAATCATTAACTTTATAC 196852 Query 279435 ATACTTTCTGGCCAGAATTGTTGAATCAAAAT---TTTGTAAGTGTGTTTCAAACACCAA 279491 || ||| ||||| | | | || | || ||| ||| | ||| || || Sbjct 196853 ATCATTTTTGGCCTTCACTCCTAAAATACAAAGGGTTTCTAAAGGAATTTGTTACTCCTT 196912 Query 279492 TTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGTATTTTATTCATTGCAGAAG-TTTGAA 279550 | || || ||||||||||| || || | || | ||| |||| || ||| ||| || Sbjct 196913 TAATCAAAGCAACTAAAGGAAATCAA--ACAATTCCTTTTTTCACTGTTTAAGATTTTAA 196970 Query 279551 CAA---TGGAAAGATTCAGTTGAGA-ATTCAGCCTCATTCCATACCAAGTATTTTAAAGG 279606 || || | ||||| ||| ||| || | ||| ||||||| ||||| Sbjct 196971 TAAGTTTGCTTAAATTCA----AGATATTAAGAGTTGGAAGATA--AAGTATTACAAAGG 197024 Query 279607 TTTAGCAACATCCAATACTAAGGAAGCAAAAGAATATTTTAAAAA----ATTAACACTTC 279662 ||||| ||||| || | |||||| |||| || || | ||| |||| | | | Sbjct 197025 TTTAGGTACATCTGATGATTTAGAAGCATAAGAGTACTTCAGAAATTTGATTAGCCATAC 197084 Query 279663 AG---AATTTTAATGC--TAATGAGAAATCA-ACTAATGCTCTTGATAAAGCTTTCAACA 279716 | ||||| || | ||||||| || | |||| | ||||| | ||| || | Sbjct 197085 AATTTAATTTAGATACGATAATGAGGAAGATGATTAAT-CGATTGATTTATGTTTTAATA 197143 Query 279717 AATCTCGTGCTGATGATCGTAAAAACTGGTTGAGAAATTATGATAAGGATGATATAA-TT 279775 || ||| ||||| | || | ||| || | | ||| || | ||| |||| || Sbjct 197144 AAAAGAAAGCTAATGATAGAAAGTAATGGCTGGCACAATATAATCATGATT-TATATGTT 197202 Query 279776 GATGAAGAACAAACTAATGTGACTTGTGAAGAATTTATTGATAAAGAACTGATCCATTTT 279835 ||| | ||||| | | | | |||| ||||| ||||||||||||| |||||| Sbjct 197203 GATCACACACAAAAAGAGCTAGGATATTAAGATTTTATACATAAAGAACTGATTCATTTT 197262 Query 279836 TCTAATTATGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAG 279895 || | |||| | | | ||||||||| | |||||||| | |||||| | Sbjct 197263 TCAATGGCTGATAATATTAGATCTATTCCTTCACTGATGGATGGACTTAAACCTGGTTAA 197322 Query 279896 CGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAG 279955 || ||| || | ||| || ||||||||||| | | | |||||| || | | | Sbjct 197323 CGAAAGGTTTTGTTCGCGTGCTTCAAAAGAAATCTCAAACAAGAAATTAAAGTGGTTTAA 197382 Query 279956 TTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGT 280015 |||| || ||| || | |||||| | | |||||||| ||||| ||| | | | Sbjct 197383 TTAGGGGGATATATTGCGGAACATTCTGCATATCATCATGGTGATATATCTTTGGTAACT 197442 Query 280016 GCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCA 280075 | ||| | ||| | || || ||||| | | ||||| || | ||||| | |||| Sbjct 197443 ACAATTATTGGTATGGCTTAAAATTTTGTAGGATCAAATAATATCAATCTTTTACTACCA 197502 Query 280076 AATGGTCAATTTGGT 280090 | ||| |||||||| Sbjct 197503 AGAGGTTAATTTGGT 197517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186802201390817