Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq697 241 1e-58 seq613 208 6e-49 seq580 167 2e-36 seq213 116 3e-21 seq347 89.7 4e-13 >seq697 Length=319182 Score = 241 bits (266), Expect = 1e-58 Identities = 555/821 (68%), Gaps = 24/821 (3%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 ||||| |||||||| | || | || |||||||| || || || || || || ||| Sbjct 146897 GAAAAGCATTTTATTAAGTATGTCCTAGCCTTTTTTGCAGCCAGTGATGGTATTGTGAAT 146956 Query 43889 GAAAATTTGGT-TAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 ||||| |||| || | | | || || |||||| || | || ||||| |||| ||||| Sbjct 146957 GAAAACTTGGCCTAATAGTTCTGTACA-GAAGTTTAAGTGCCTGAAGCCAGATGCTTTTA 147015 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| ||| |||| || || |||||||| ||||| |||| || |||| ||||||| || Sbjct 147016 TGGATTTTAAATAGCAATGGAAAATATACATTCAGAAACTTATTCTCTTTTGATAGACAC 147075 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTA-ATGCGATAGAAACAGTACCTG 44066 ||||| | |||| | || ||| | | || | || |||| || || | || |||| Sbjct 147076 TTACATAACCGATGAAAATGAAAAGAA-CTATCTTCTACATGCAATTGACAATGTGCCTG 147134 Query 44067 CGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAG 44126 ||| || | || ||| ||||| | |||||||||||| |||||||| |||| | Sbjct 147135 TTATTCAAAAGAAGGCAATGTGGGCTATGAAATGGATAAATGAGAATGATTCATTTGCTG 147194 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186 | || | | || ||||| | ||| |||||||| |||||||| || || ||| |||| Sbjct 147195 AGAGATTGATTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGCCA 147254 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 |||||||| | || ||| || ||||||||||| | || || |||||||| ||||| Sbjct 147255 TATTTTGGATCAAAAAAAGATCATTGATGCCTGGACTCACCTTCTCAAATGAATTAATTT 147314 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTG-CTTGT-TACTTGGATATCTAGGAGA 44304 | |||||||| | ||| || |||||||| || | ||| | || | | | Sbjct 147315 CAAGGGATGAAGGTCTCCATACAGACTTTGCTTGTCTCCTGTACAAGCATTTAGTTAATA 147374 Query 44305 CGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACA 44364 || || | || ||| |||| || || | | ||| || | || ||| | Sbjct 147375 AAATGAG---TAATCAAAG--AATTCATGAAATAATATCATCGGCTGTTGAAATTGAAAA 147429 Query 44365 AGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAA 44424 |||||| || | ||| |||| || | | || ||||||||| ||||||||| Sbjct 147430 AGAATTCATTAGTGAAGCTCTACCAGTTGAACTTATTGGAATGAATTCCAATTTGATGAA 147489 Query 44425 CCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT--TGC---GATAAA 44479 |||||||||||| | |||||| | || | || | | ||||| | | ||| | Sbjct 147490 ATAATATATTGAATTTGTAGCAGATAGATTGATATTTGCATTGGGTGCTCCCAAGATTTA 147549 Query 44480 CACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACA 44539 || ||| | | || || ||||| | ||||| | || || ||| |||| ||||| Sbjct 147550 CA----ATTCGA-AGAATCCTTTTGAGTGGATGGATATGATATCTTTGTAAGGTAAAACC 147604 Query 44540 AACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA-TAACAAGT-- 44596 || || || |||| | | || ||||| ||||| | || ||||||| ||| || | Sbjct 147605 AATTTCTTCGAAAGAAGAGTGGGAGACTATCAAAAAGCTGGAGTCATGAGTAAAAAATAA 147664 Query 44597 GACAATAAATTTACTACGGATGAAGATTTCTAATTAATCAG 44637 || || |||||||| ||||| ||| |||| |||||| || Sbjct 147665 GATAAAGTATTTACTATGGATGCAGACTTCTGATTAATTAG 147705 >seq613 Length=410769 Score = 208 bits (230), Expect = 6e-49 Identities = 525/787 (67%), Gaps = 16/787 (2%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCA 43914 || || ||||| || || || || || || |||||||| |||| | | | | || || Sbjct 198043 GCCTTCTTTGCAGCAAGTGATGGTATTGTGAATGAAAACTTGGCCCAATAGTTCTGTACA 197984 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||| ||| | || |||||| |||| || ||||| ||| |||| || || || || || Sbjct 197983 -GAAGTGCAAGTTCCTGAAGCAAGATGCTTCTATGGATTTTAAATAGCTATGGAGAACAT 197925 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||| || |||| || ||| |||| ||||| || || | |||| | |||||| | Sbjct 197924 TCACTCAGAAACCTATTCACTTTTGATTGATACCTATATAACCGATGAAAATGAGAAGAA 197865 Query 44035 TCGATTGTTTA-ATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 | || | | |||| || || | || |||| ||| || | |||||| ||||| Sbjct 197864 -CTATCTTCTCCATGCCATTGATAATGTGCCTGTTATTCAAAAGAAAGCAATGTGGGCAA 197806 Query 44094 TTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 | |||||||| ||| |||||||| |||| ||| || | | || ||||| | ||| | Sbjct 197805 TGAAATGGATTAATAATAATGATTCATTTGCTGAAAGATTGATTGCCTTTGCTGCTGTTG 197746 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 ||||||| |||||||| || || ||| || ||||||||| | || ||| || |||| Sbjct 197745 AAGGCATCTTCTTTTCTGGTTCATTTTGTGCTATATTTTGGATCAAAAAAAGATCATTGA 197686 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATT 44273 |||| || | || ||||||||||| ||||| | |||||||| | ||| || | Sbjct 197685 TGCCAGGACTCACCTTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTCCATACAGACT 197626 Query 44274 TTGCTTG-CTT-GTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTAC 44331 ||||||| ||| |||| |||| | | | | || |||| || | | | Sbjct 197625 TTGCTTGTCTTCTTTACAAACATATGATTAATAAGTTGAGTATTCA------ACGAGTTC 197572 Query 44332 A-GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390 | || || || || || | || ||| ||||||| || | ||| ||||| | Sbjct 197571 ATGAAATCATTTCTTCTGCTGTTGAAATTGAAAAAGAATTCATCAGTGAAGCTTTACCAG 197512 Query 44391 TAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450 | | |||| ||||||||| ||||||||| |||||||||||| | |||||||| Sbjct 197511 TTGAACTAATTGGAATGAATTCCAATTTGATGAAATAATATATTGAATTCGTTGCAGATA 197452 Query 44451 GTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTA 44510 | || | || | | |||| ||| ||| | | | | || || ||||| | | Sbjct 197451 GATTGATATTTGCATTGGGAGCTCCTAAGATCTACAATTCAAAGAATCCTTTTGAATGGA 197392 Query 44511 TGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATC 44570 |||| | || || || |||| ||||| || || || |||| | | |||||||| || | Sbjct 197391 TGGATATGATATCCTTATAAGGTAAAACTAATTTCTTCGAAAGAAGAGTTGGAGACTACC 197332 Query 44571 AGCGAATGGGCGTCATGA-TAACAAGT--GACAATAAATTTACTACGGATGAAGATTTCT 44627 | | || || |||| || || | || || |||||||| ||||| ||| || | Sbjct 197331 AAAAAGCTGGAGTTATGAGCAAAAAATAAGATAAAGTATTTACTATGGATGCAGACTTTT 197272 Query 44628 AATTAAT 44634 ||| || Sbjct 197271 GATTCAT 197265 >seq580 Length=425387 Score = 167 bits (184), Expect = 2e-36 Identities = 315/458 (69%), Gaps = 9/458 (2%) Strand=Plus/Plus Query 40829 ATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGG 40888 ||||||| || ||| || ||| || |||| | ||| ||| | || || || ||||| Sbjct 402506 ATATTTGGATACCATTGGTTTATAACATAGATAGGAACATGACTTAGGACCAGTCTATGG 402565 Query 40889 ATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAATAA 40948 |||||| | | ||||||||||||| |||||| | | || |||||||| ||||| | Sbjct 402566 ATTTCAATGGAGACATTTTGGAGCTAAATATAAGGATTGTTAGACTGATTATTCCAATTA 402625 Query 40949 AGGAATGGATCAATTACAGTGCGTTATAGA--TACGATTAAATCCGATCCCGATAGCCGA 41006 |||| ||||| || | || ||||| | ||| | ||| | |||| ||||| || Sbjct 402626 AGGAGTGGATTAAGTGAAGGAGATTATACAATTAC--TGAAAAACAATCCAGATAGTAGA 402683 Query 41007 CGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGT 41066 | |||||||| | || ||||| |||| || || | | |||||||||||||| ||| Sbjct 402684 AGAATAATATTATCAGCTTGGAATCCAATTGATTTAAAATAAATGGCATTGCCACCATGT 402743 Query 41067 CATTTGTTATGTCAGTTTTACGTTTGC--AATGGTGAACTGTCATGTCAATTGTATCAAA 41124 ||| || |||||| || | || ||||| || || || ||||| | | Sbjct 402744 CATGTG--ATGTCATAATTCTTTGTGGCAAATGGCAAATTGAGTTGCATGATGTATTAGA 402801 Query 41125 GATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGT 41184 ||||| ||||| | || | || | || || || || || |||||||| ||||||| | Sbjct 402802 GATCATGTGACTTTGGTTTGGGAATTCCCTTCAATATTGCTAGTTATGCATTGCTCACTT 402861 Query 41185 ATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATG 41244 | ||| | ||| | | |||||| || || ||||||||||| ||||||||| Sbjct 402862 ACATGTTGGCAAAGGAATGCAATTTGAATTTGGGAGAATTTGTTCATGTTTTAGGAGATA 402921 Query 41245 GACATATTTACATTAATCACATAGAGCCGTTAACAGAA 41282 |||||||| | |||||| | ||| | |||| |||| Sbjct 402922 CTCATATTTATAGTAATCATGTGGAGGCTTTAA-AGAA 402958 >seq213 Length=537272 Score = 116 bits (128), Expect = 3e-21 Identities = 367/563 (65%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA 19419 ||||| ||||| || ||| || || || ||||| ||| || | |||| || | | | Sbjct 371964 TATGGTCCACCAGGAACTGGTAAGACTTTGATTGCAAGATAATTGGCTAAAGTATTGA-A 371906 Query 19420 AAACAA-CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 ||| || ||||| ||||| ||||| || || || || | ||||| ||| || | | Sbjct 371905 GGCCAAGCCACCCAAGATTGTGAATGGGCCAGAGATTTTCAGTAAATTTGTTGGAGAGGC 371846 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA-ACGTTTAGGGC 19537 ||||||||||| || | || || || || || ||| || | || |||| Sbjct 371845 TGAAGAAAATGTCAGAAAACTATTCGCAGAAGCCATAGCAGATTAAGAGACAA--AGGGT 371788 Query 19538 GCA-AAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 | ||||| |||||| || || || | |||||| |||| |||||||| || ||||| Sbjct 371787 GATTAAAGTGATTTGCATATCATTGTATTTGATGAAATGGATGCAATCTGCAAATAAAGA 371728 Query 19597 GGTTCTGGTGTAAATGGAGTAC------ATGACACTGTTGTCAATCAACTCCTGTCAAAA 19650 || || | |||| | |||| | ||||||||||||| | || || | Sbjct 371727 GGGTCAATTAACTCTGGATCAGGGGCCTATGATAATGTTGTCAATCAATTGCTCTCTATG 371668 Query 19651 TTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAA 19710 |||| || |||||| || ||||| || || || ||||| |||||||||||| || Sbjct 371667 ATAGATGGAGTTAACTCTCTCAATAACATATTGGTCATTGGTATGACTAATAGAAAAGAC 371608 Query 19711 TTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTA 19770 ||||| || || | | |||| || | || ||| | | || ||| | || Sbjct 371607 TTAATTGATGAGGCTGTTCTCAGACCAGGAAGATTTGAAGTGCATATTGAAGTCGGATTG 371548 Query 19771 CCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAAT 19830 || |||||| | ||| | | ||||| || || ||||| || | || | ||| Sbjct 371547 CCAGATGAAGGAGGAAGATAATAGATTTTGAATATTCATACTGAAAATCTTAGAAAGAAT 371488 Query 19831 AACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGC 19890 | ||| || | |||||| || |||||||| | ||| |||||||| |||| Sbjct 371487 GAAGCTTTGGATTATGATGTAAATTTAGAAGAACTAGCATAAATCACCAAAAATTATACT 371428 Query 19891 GGCGCAGAACTTGAGGGATTAGT 19913 || || ||| |||||| | |||| Sbjct 371427 GGTGCTGAAATTGAGGCAGTAGT 371405 >seq347 Length=483735 Score = 89.7 bits (98), Expect = 4e-13 Identities = 305/472 (65%), Gaps = 10/472 (2%) Strand=Plus/Minus Query 19348 GGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGT 19407 || || ||| | ||||| || || || ||| ||||| || ||||| ||| || | | Sbjct 309276 GGTCTCTTGTTGTATGGTCCTCCAGGAACTGGTAAAACCTTGATTGCAAGATAATTGGCT 309217 Query 19408 AAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATAT 19467 ||| | | | | ||||| || ||||| ||||| || || || || | ||||| | Sbjct 309216 AAAGTGTTGAAGGCTAAGCCTCCAAAGATTGTTAATGGACCAGAGATTTTCAGTAAATTT 309157 Query 19468 GTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAA-AA 19526 ||||| | | ||||||||||| || | |||||||| ||| | ||| ||| | Sbjct 309156 GTAGGAGAGGCCGAAGAAAATGTCAGAAAACTATTTGCTGAGGCTATTGCAGATCAAGAG 309097 Query 19527 ACGTTTAGGGCG-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCT 19585 || |||| | ||||| |||||| || || | | |||||| |||| || || | Sbjct 309096 AC--AAAGGGTGATTAAAGTGATTTGCATATCATTGTCTTTGATGAAATGGATGCCATAT 309039 Query 19586 GTAAGCAAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAAC 19639 |||| ||||||| || || | |||| |||| | ||||| |||||| Sbjct 309038 GTAAATAAAGAGGATCCATTAACTCTGGATCAGGAGCCTATGATAACGTTGTAAATCAAT 308979 Query 19640 TCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTA 19699 | | || | | || || || || || || ||||| || || ||||| ||||||| Sbjct 308978 TGTTATCCATGATTGATGGAGTCAATTCTCTTAACAATATATTGGTCATTGGTATGACTA 308919 Query 19700 ATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCG 19759 ||||| || ||||| || || | || |||| || | || ||| || | || | Sbjct 308918 ATAGAAAAGACTTAATTGATGAGGCTGTTCTAAGACCAGGAAGATTTGAAGTACATATTG 308859 Query 19760 AAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC 19811 | || || || ||||||| || | | ||||||||||| ||||| Sbjct 308858 AGGTTGGATTGCCGGATGAATAAGGTAGATAATAGATTTTAAACATTCATAC 308807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452623735485