Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq613 102 1e-16 seq697 87.8 2e-12 >seq613 Length=410769 Score = 102 bits (112), Expect = 1e-16 Identities = 195/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 |||||||| ||||||| ||||| | ||||||||| ||| || |||||||| | Sbjct 197634 TGGAGACCTTCATCTCTTGAAATTAATTCATTTGAAAAGGTGAGTCCTGGCATCAATGAT 197693 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 | || || | |||| | ||||| || ||||| || || |||||||| || || ||| Sbjct 197694 CTTTTTTTGATCCAAAATATAGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCA 197753 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 ||||| |||| | | ||| || || || | || || || ||||||||||||| Sbjct 197754 GCAAAGGCAATCAATCTTTCAGCAAATGAATCATTATT---ATTAATCCATTTCATTGCC 197810 Query 122851 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTT 122910 || | || ||||| | |||| || ||| | | ||||| | | | | ||||| Sbjct 197811 CACATTGCTTTCTTTTGAATAACAGGCACATTATCAATGGCATGGAGAAGATAGTTCTTC 197870 Query 122911 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 ||| | |||| | || || | |||||||| |||||| ||||| Sbjct 197871 TCATTTTCATCGGTTATATAGGTATCAATCAAAAGTGAATAGGTTTC 197917 >seq697 Length=319182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 |||||||| ||||| | ||||| | ||||||||||||| || || ||||| | Sbjct 147333 TGGAGACCTTCATCCCTTGAAATTAATTCATTTGAGAAGGTGAGTCCAGGCATCAATGAT 147274 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 | || || | |||| | || || || ||||| || || |||||||| || || ||| Sbjct 147273 CTTTTTTTGATCCAAAATATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCA 147214 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCC 122850 ||||| |||| | | || || || || | || ||| | ||||||||| ||| Sbjct 147213 GCAAAGGCAATCAATCTCTCAGCAAATGA---ATCATTCTCATTTATCCATTTCATAGCC 147157 Query 122851 CATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTT 122910 || | |||||||| | |||| || ||| | | || || | | | | |||||| Sbjct 147156 CACATTGCCTTCTTTTGAATAACAGGCACATTGTCAATTGCATGTAGAAGATAGTTCTTT 147097 Query 122911 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 ||| | |||| | ||||| |||| ||||| ||||| ||||| Sbjct 147096 TCATTTTCATCGGTTATGTAAGTGTCTATCAAAAGAGAATAAGTTTC 147050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026528271200