Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq697 104 3e-17 seq613 95.1 1e-14 >seq697 Length=319182 Score = 104 bits (114), Expect = 3e-17 Identities = 335/509 (66%), Gaps = 17/509 (3%) Strand=Plus/Plus Query 94743 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCGTTCCTTTG 94801 |||||||||||| || ||||||||||| ||| | || | || | ||| |||| Sbjct 147136 TATTCAAAAGAAGGCAATGTGGGCTATGAAATGGATAAATGAGAATG----ATTCATTTG 147191 Query 94802 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 94861 ||||| || | | || ||||| |||||| || |||||||| |||||||| || || | Sbjct 147192 CTGAGAGATTGATTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTG 147251 Query 94862 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 94921 | || | |||| |||| || || | ||||| || ||| |||||| || || | | Sbjct 147252 CCATATTTTGGATCAAAAAAAGATCATTGATGCCTGGACTCACCTTCTCAAATGAATTAA 147311 Query 94922 TCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCG-T 94980 | || | || || || ||||| ||| ||||| || | | | || ||| | | Sbjct 147312 TTTCAAGGGATGAAGGTCTCCATACAGACTTTGC-TTGTCTCCTGTACAAGCATTTAGTT 147370 Query 94981 ATTAAACCAACGACTGAGACTATTCAT--TCTATTGTTAAGGAAGCCGTTGAGATTGAGA 95038 | |||| | | | | | |||||| || | | | | || ||||| ||||| | Sbjct 147371 AATAAAATGAGTAATCAAAGAATTCATGAAATAATATCATCG--GCTGTTGAAATTGAAA 147428 Query 95039 AAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGT 95098 ||| |||||| || || || ||| | || || || |||||||| | ||| Sbjct 147429 AAGAATTCATTAGTGAAGCTCTACCAGTTGAACTTATTGGAATGAATTCCAATTTGATGA 147488 Query 95099 CTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA--AT 95156 |||||||||| | |||| | ||||||||| | | | |||||| ||| || Sbjct 147489 AATAATATATTGAATTTGTAGCAGATAGATTGAT--ATTTGCATTGGGTGCTCCCAAGAT 147546 Query 95157 TTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCG-ACGGGAAGACAA 95215 || || || |||||||| ||||| | ||||| | | || | | | | || || || | Sbjct 147547 TTACAATTCGAAGAATCCTTTTGAGTGGATGGATATGA-TATCTTTGTAAGGTAAAACCA 147605 Query 95216 ACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 | |||||||||| || || || |||||| Sbjct 147606 ATTTCTTCGAAAGAAGAGTGGGAGACTAT 147634 >seq613 Length=410769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 94743 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 94802 ||||||||||||||| ||||| ||||| ||| || ||| || ||| ||||| Sbjct 197831 TATTCAAAAGAAAGCAATGTGGGCAATGAAATGGATTAATAATAA---TGATTCATTTGC 197775 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||| || | | || ||||| |||||| || |||||||| |||||||| || || || Sbjct 197774 TGAAAGATTGATTGCCTTTGCTGCTGTTGAAGGCATCTTCTTTTCTGGTTCATTTTGTGC 197715 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 ||| | |||| |||| || || | |||||||| ||| ||| || || || | || Sbjct 197714 TATATTTTGGATCAAAAAAAGATCATTGATGCCAGGACTCACCTTTTCAAATGAATTAAT 197655 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || | || || || ||||| ||| ||||| Sbjct 197654 TTCAAGAGATGAAGGTCTCCATACAGACTTTGC 197622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255718340280