Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq65 183 1e-41 >seq65 Length=223177 Score = 183 bits (202), Expect = 1e-41 Identities = 409/605 (68%), Gaps = 22/605 (4%) Strand=Plus/Minus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 ||||| |||||||| | | ||||||| || | |||| ||||| || || |||| | Sbjct 197720 CCTGTTCCAATACCTTCAGCTCCATTTACTAGACTCATTGGAATTATAGGAACATAGTAT 197661 Query 64952 ATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTT 65011 ||||||||| || |||||||| || | ||| |||| || | ||||| | || | Sbjct 197660 TCAGGCTCAACCATTTCTCCATCATCCTCAATATATTTCACAACGTGGTCATCTTATTCT 197601 Query 65012 GGAAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGG 65071 || |||||| | | || |||||||| | | ||| |||| ||||| | || || || Sbjct 197600 GGGAATATATATCTTGTAATTTTATTTAGTACAGTTGAAATGTATCTCGCAGAAGCATGA 197541 Query 65072 TCTTGTCC------AGTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATA 65125 || | ||| || || | | ||||| | ||| |||| | ||| | ||| ||| Sbjct 197540 TCCTTTCCTCCCATAGCTCTAC---TACCAAATTAACCTCTTGGTAGTAAAAGATTGATA 197484 Query 65126 TTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCA 65185 || ||||| || | |||||| | |||||| || ||||||| | ||| ||| Sbjct 197483 TTATTTGATCCTACAAAATTTTAAGCCATACCAATAATTGTAGTTACCAAAGATATATCA 197424 Query 65186 CCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCC 65245 || ||||||||| | |||||||| | | |||||| | |||| | | ||||| ||||| Sbjct 197423 CCATGATGATATGCAGAATGTTCCGCAATATATCCCCCTAATTAAACCACTTTAATTTC- 197365 Query 65246 GTTGTT--AAATTCTTTTTAAATGCA-GAATACAATATTTTCCGTAAACTAATTTTCAAT 65302 ||||| | ||| |||| || ||| | |||| | || ||| ||| | ||| | | Sbjct 197364 -TTGTTTGAGATTTCTTTTGAA-GCACGCGAACAAAACCTTTCGTTAACCAGGTTTAAGT 197307 Query 65303 CCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCT 65362 |||||||| | |||||| ||| | |||| |||| ||||| || | |||| Sbjct 197306 CCATCCATCAGTGAAGGAATAGATCTAATATTATCAGCCATTGAAAAATGAATCAGTTCT 197247 Query 65363 TTGTTAATAAATTCTTCATATGAAACACTCGTATTATCTGTATTCAA-ATAACTATCGCG 65421 || | ||||| |||| |||| | ||| | || | ||| |||| ||| ||| | Sbjct 197246 TTATGTATAAAATCTTAATATCCTAG-CTCTTTTTGTGTGTGATCAACATATAAATCATG 197188 Query 65422 ATTATATTTTTCTAACCATTCTTTTCTATCACTTGAGCGTT---TTTATTAAATATTAAA 65478 |||||||| | | | ||||| ||||||||| | ||| || ||||||||| |||| Sbjct 197187 ATTATATTGTGCCAGCCATTACTTTCTATCATT--AGCTTTCTTTTTATTAAAACATAAA 197130 Query 65479 TCAAT 65483 ||||| Sbjct 197129 TCAAT 197125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235677997972050