Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq180 91.5 2e-13 >seq180 Length=553472 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 89181 ACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAACTTAGGAGGTGGGCTGATATA 89240 ||||||||| || ||||| || || ||||| ||| | | | ||||| || | Sbjct 268741 ACATGGAAATAAAGGAATGATCCAGTATTACATATTGAATTGCGAAAATGGGCAGAC-TG 268683 Query 89241 TTTATT-ATCGCGCCACTAACGGCTAATACTCTAGCGAAGATAGCTAATGGTATATGCGA 89299 |||| | || || || ||| | || |||||| | || |||||||||||||| |||| || Sbjct 268682 TTTACTGATAGCTCCTCTATCAGCCAATACTATGGCTAAGATAGCTAATGGCTTATGTGA 268623 Query 89300 CAACTTACTAACTTCTATAGTTAGGGCATGGGATATATCA-AAGCCCCTTATTTTTTGTC 89358 || ||| |||| | | | || ||||||||| || | || || | ||||| || Sbjct 268622 TAATTTATTAACAAATGTTGCCAGAGCATGGGAT-TACAAGAAACCTATGATTTTAGCTC 268564 Query 89359 CTGCCATGAATACTCTAATGTGGGAACATCCTATTACTGAATCACAAATAGATACTCTTA 89418 |||| ||||||||| | |||| || |||| || || ||| |||||| ||| || | Sbjct 268563 CTGCAATGAATACTATGATGTATGAGAATCCAATCACAGAAAAACAAATCAATAAACTAA 268504 Query 89419 AACATATGGGT 89429 || | || ||| Sbjct 268503 AAAAGATCGGT 268493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603175544787280