Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq247 104 1e-17 seq680 91.5 9e-14 seq36 89.7 3e-13 seq386 84.2 1e-11 seq99 84.2 1e-11 seq71 82.4 5e-11 >seq247 Length=527326 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | ||| |||||||||||||| |||||||| ||||||||||||||| Sbjct 406069 CCTCCTCTGAGTCTCAATACCAAATGGAGAGTTGATTCCTTTTGGATGTTATAATCTGAA 406010 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| | ||| || || || || ||||| | | ||| || || || Sbjct 406009 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCGAAAATTAATCTTTATTGATCGGGAGGG 405950 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| |||| |||| ||||| | || ||||| ||| || Sbjct 405949 ATTCCTTCCTTGTCCTAGATC-TTTGCCTTAACAGCATCGATAGTGTCAGATGGCTCAAC 405891 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || || ||||| || | || || |||||||| | ||| || Sbjct 405890 ATCGAGTGTGATGGTCTTACCCGTGAGGGTCTTAACAAAAATTTACATATT 405840 >seq680 Length=357438 Score = 91.5 bits (100), Expect = 9e-14 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || ||||||||||| || |||| ||| |||||||||||| Sbjct 173420 CCACCTCTTAATCTCAATACTAAATGGAGAGTTGATTCTTTTTAAATATTATAATCTGAA 173479 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| ||||||||||||| || || || || || || | | || || || || Sbjct 173480 AGTGTTCTTCCGTCTTCAAGTTGCTTTCCTGCGAAAATCAATCTTTATTAATCAGGAGGA 173539 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || || ||| ||||| || | | |||||||||| ||| || Sbjct 173540 ATTCCTTCTTTATCTTAAATCTTGGCCTTGACTGCATCAATTGTGTCTGATGGCTCAACA 173599 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | || || || || || || | ||||| |||||||| | ||| || Sbjct 173600 TCAAGAGTGATGGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACATATT 173649 >seq36 Length=667686 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || || |||||||| || |||| ||| |||||||||||| Sbjct 163413 CCACCTCTTAATCTCAAAACTAAGTGGAGAGTAGATTCTTTTTAAATATTATAATCTGAA 163472 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||||||||| || || ||||| || || | | ||| || || || Sbjct 163473 AGAGTTCTTCCGTCTTCAAGTTGCTTTCCTGCAAAAATCAATCTTTATTGATCAGGTGGA 163532 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| || || ||| ||||| || | | ||| |||||| |||||| Sbjct 163533 ATTCCTTCTTTATCTTAAATCTTAGCCTTGACAGCATCAATGGTGTCTGAAGGCTCCACA 163592 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || || || || | ||||| |||||||| | ||| Sbjct 163593 TCAAGTGTGATAGTCTTTCCCGTAAGGGTTTTAACAAAAATTTACAT 163639 >seq386 Length=4266 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 34471 CAATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTA 34530 ||||| | ||| ||||| | | ||| || || ||||||||| ||||||| |||||| Sbjct 3047 CAATCTTAGCCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTA 2988 Query 34531 TAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGG 34590 |||||||||||||||| | ||||| | || || || ||||| || | | | || Sbjct 2987 TAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAA 2928 Query 34591 TCCGGCGGCACTCCCTCCTTGTCT 34614 || || || | ||| ||||||||| Sbjct 2927 TCAGGTGGGATTCCTTCCTTGTCT 2904 >seq99 Length=47800 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || || ||||||||| ||||||| ||||||||||||||| Sbjct 7402 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTGGATTCCTTTTAGATGTTATAATCTGAA 7343 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || || || ||||| || | | | || || || || Sbjct 7342 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 7283 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| | | ||| | || || | ||| |||||| || || Sbjct 7282 ATTCCTTCCTTATCT-TAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAAC 7224 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 7223 ATCAAGAGTGATGGTTTTTCCAGTTAATGTTTTTACAAATATTTGCAT 7176 >seq71 Length=215326 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || || || || |||||| ||||||| ||||||||| ||||||||||||| ||||| Sbjct 119686 AAGACTAAGTGAAGAGTGGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCGTCT 119745 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | || |||||| || || || | | |||| || || || | ||| ||||||||| Sbjct 119746 TCTAATTATTTACCAGCGAAGATAAGTCTTTGTTAATCGGGTGGGATTCCTTCCTTGTCT 119805 Query 34615 GTGATCTT 34622 ||| || Sbjct 119806 TGGATTTT 119813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726926470401