Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq99 104 2e-17 seq70 104 2e-17 seq247 96.9 3e-15 seq60 89.7 4e-13 seq114 82.4 7e-11 >seq99 Length=47800 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||||||||| | || || || | || |||||||| || ||||| || Sbjct 7176 ATGCAAATATTTGTAAAAACATTAACTGGAAAAACCATCACTCTTGATGTTGAACCATCA 7235 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| |||| || ||||| || ||||| ||| || Sbjct 7236 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGATAAGGAAGGAATCCCACCTGATTAA 7295 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| ||||| ||| Sbjct 7296 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGATTATAAC 7355 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||| || || | || || |||||| | ||| | ||||| || Sbjct 7356 ATCTAAAAGGAATCCACTCTCCACTTAGTTTTGAGATTGAGAGGTGGAAT 7405 >seq70 Length=215836 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || || ||| |||| || ||| ||||||||||||| || ||||| || Sbjct 1345 ATGTAAATTTTCGTTAAGACTTTGACTGGAAAGACTATTACTCTTGATGTTGAACCATCA 1286 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 1285 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 1226 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| ||||| | || |||| || || ||| Sbjct 1225 TAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGATGGAAGAACACTTTCAGACTATAAC 1166 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||| || || | || || || ||| | ||| | ||||| || Sbjct 1165 ATTTAAAAGGAATCAACTCTCCACTTAGTGTTGAGATTGAGAGGTGGAAT 1116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||| |||||| | || || ||| ||||||||||||| || ||||| || Sbjct 143 ATGTAAATATTTGTTAAAACTTTAACAGGAAAGACTATTACTCTTGATGTTGAACCATCA 84 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| ||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 83 GACACTATTGACGCTGTCAAGGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 24 >seq247 Length=527326 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| || || || || || ||| | || || || || || || || || Sbjct 405843 ATGTAAATTTTTGTTAAGACCCTCACGGGTAAGACCATCACACTCGATGTTGAGCCATCT 405902 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || || || ||| || | ||||| ||||| || || ||||||||| Sbjct 405903 GACACTATCGATGCTGTTAAGGCAAAGATCTAGGACAAGGAAGGAATCCCTCCCGATCAA 405962 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | ||||| | ||| || || ||||||||||| | || |||| ||||| ||| Sbjct 405963 TAAAGATTAATTTTCGCTGGAAAGCAATTGGAAGATGGAAGAACTCTTTCAGATTATAAC 406022 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || |||||||| || || | |||||||| ||| Sbjct 406023 ATCCAAAAGGAATCAACTCTCCATTTGGTATTG 406055 >seq60 Length=234462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || |||||||| | ||| | || ||| | ||||||||||| || || || | Sbjct 129097 ATGTAAATTTTTGTAAAGAATCTTAGTGGAAAGACAATTACTCTTGATGTTGAGCCAGAC 129038 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 | | ||||| ||| | ||| |||||| || ||||| ||||| || ||||| ||| || Sbjct 129037 TAAACAATTGATATGATTAAATCAAAAATCCAGGACAAGGAAGGAATCCCACCTGATTAA 128978 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | |||| | || || ||| |||| ||||| | || || ||||| ||| Sbjct 128977 TAAAGACTAATTTTTGCAGGAAAATAATTAGAAGATGGAAGAACACTTGGAGATTATAAC 128918 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | || || || ||| | ||| | || || Sbjct 128917 ATCCAAAAGGAATCCACAATTCACTTAGTATTGAGATTGAGAGGAGG 128871 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 || || || ||||||||||| || ||||| || |||||||||| || || | | Sbjct 129325 ATTCAAATTTTTGTAAAAACCCTAACCGGAAAAACTATTACTCTCGATGTAAAGTCAGAA 129266 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| |||||| |||||| ||||||| ||||| || ||||| ||| || Sbjct 129265 GATACTATTGATGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 129206 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | ||| || || ||||| || || | || ||| ||||| ||| Sbjct 129205 TAAAGACTCATTTTCGCAGGAAAGCAATTAGAGGATGGAAGAACACTTTAAGATTATAAC 129146 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||| || || | || || || ||| | ||| | ||||| || Sbjct 129145 ATCTAAAAGGAATCAACTCTTCACTTAGTCTTGAGATTGAGAGGTGGAAT 129096 >seq114 Length=584889 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| || || || || |||||| | || || || || || || || || Sbjct 475324 ATGTAAATTTTTGTTAAGACCCTCACGGGCAAGACCATCACACTCGATGTCGAGCCATCT 475383 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || || ||| || ||||||||||||| || || |||||| || Sbjct 475384 GATACTATCGATGCTGTTAAGGCAAAGATCTAAGACAAAGAAGGAATCCCTCCCGATTAA 475443 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | || || | || || || |||||||| || | || |||||||||| ||| Sbjct 475444 TAAAGATTGATTTTTGCTGGAAAGCAATTGGAGGATGGAAGAACTCTTTCCGATTATAAC 475503 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || ||||||| || || | ||||| || ||| Sbjct 475504 ATCTAAAAGGAATCAACTCTCCATTTAGTATTG 475536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914610773440