Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq697 201 1e-46 seq613 159 3e-34 >seq697 Length=319182 Score = 201 bits (222), Expect = 1e-46 Identities = 515/778 (66%), Gaps = 7/778 (1%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||| |||||| || || |||| ||||||||||||| ||||| |||| || Sbjct 147648 ACTCCAGCTTTTTGATAGTCTCCCACTCTTCTTTCGAAGAAATTGGTTTTACCTTACAAA 147589 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCA-CACTTTAG 4366 || || | ||||| | ||||| ||||| | | |||||| || | ||| | Sbjct 147588 GATATCATATCCATCCACTCAAAAGGATTCTTCGAATTGTAAATCTTGGGAGCACCCAAT 147529 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 || | | ||||| || ||||||||||| ||||| | |||| | | | | || || Sbjct 147528 -GCAAATATCAATCTATCTGCTACAAATTCAATATATTATTTCATCAAATTGGAATTCAT 147470 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 |||||| | | || ||||| || | | | || |||| ||| || || || Sbjct 147469 TCCAATAAGTTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTCAACAGCCGA 147410 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 || ||||| || | ||| | | ||| |||||| ||||| | ||| | Sbjct 147409 TGATATTATTTCATGAATTCTTTGATTACTCATTTTATTAACTAAATGCTTGTACAGGAG 147350 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| ||||| || ||| | |||||| || || ||| | ||| || || || || | Sbjct 147349 ACAAGCAAAGTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTTGAGAAGGTGAG 147290 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 ||| ||||| || ||| ||||| | ||||||||| || |||||| ||||||||||| Sbjct 147289 TCCAGGCATCAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAACCAGAAAAGAA 147230 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 |||||||| || || ||||| || | |||| | || || | || || || Sbjct 147229 GATGCCTTCAACAGCAGCAAAGGCAATCAATCTCTCAGCAAATGAAT---CATTCTCATT 147173 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||||| | ||||| | || || || | || || | ||| || || | Sbjct 147172 TATCCATTTCATAGCCCACATTGCCTTCTTTTGAATAACAGGCACATTGTCAATTGCATG 147113 Query 4787 AAATAATTTACTT-TTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 | || || || |||||| | || || ||||||||||| | || ||| Sbjct 147112 TAG-AAGATAGTTCTTTTCATTTTCATCGGTTATGTAAGTGTCTATCAAAAGAGAATAAG 147054 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTA 4905 |||| |||||||||||||| || || || | |||||| ||||||||||| ||||| | | Sbjct 147053 TTTCTGAATGTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATCTGGCTTCAGGCA 146994 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 ||| |||||| |||| || || | |||||||| || || ||||| |||||||||| Sbjct 146993 CTTAAACTTCTGTACAGAACTATTAGGCCAAGTTTTCATTCACAATACCATCACTGGCTG 146934 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 ||||||| || | |||| ||||| | || ||| |||| |||| |||| ||| Sbjct 146933 CAAAAAAGGCTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAAGCTTTTCCCA 146876 >seq613 Length=410769 Score = 159 bits (176), Expect = 3e-34 Identities = 521/798 (65%), Gaps = 45/798 (6%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| ||| ||||||||| || |||| ||||||||||||||||||| |||| ||| Sbjct 197318 AACTCCAGCTTTTTGGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTTATAA 197377 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTT----TCACAC 4361 || || | ||||| | ||||| ||||| ||| ||||| || || || || Sbjct 197378 GGATATCATATCCATCCATTCAAAAGGATTCTTTGAATTGTAGATCTTAGGAGCTCCCAA 197437 Query 4362 TTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAG 4421 | || | | ||||| || || || ||||| ||||| | |||| | | | | Sbjct 197438 T-----GCAAATATCAATCTATCTGCAACGAATTCAATATATTATTTCATCAAATTGGAA 197492 Query 4422 TTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACG 4481 || |||||||||| | || |||| || | | | || |||| ||| || || Sbjct 197493 TTCATTCCAATTAGTTCAACTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAACA 197552 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAA------GTAT 4535 || | || || || | | | | || || | | ||| ||| || | Sbjct 197553 GCAGAAGAAATGATTTCATGAACT----CGTTGAATACTCAACTTATTAATCATATGTTT 197608 Query 4536 CCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTA 4595 ||| || | || ||||| || ||| | |||||| ||||| ||| | ||| || Sbjct 197609 GTAAAGAAGA--CAAGCAAAGTCTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTT 197666 Query 4596 GAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGAC 4655 ||||| || | ||| ||||| || ||| ||||| | |||||||||||| |||||| Sbjct 197667 GAAAAGGTGAGTCCTGGCATCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAA 197726 Query 4656 CCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTG 4715 ||||||||||| |||||||| || || ||||| || | |||| | || || Sbjct 197727 CCAGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATCAATCTTTCAGCAAATGA---A 197783 Query 4716 GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCT---TAAC--GCACGGAA 4770 | || | ||||||||||| | |||||| | ||||| || | |||| |||| | Sbjct 197784 TCATTATTATTAATCCATTTCATTGCCCACATTGCTTTCTTTTGAATAACAGGCAC---A 197840 Query 4771 TTGTGTAT---ATAGCGTTAAATAATT-TACT-TTTTTCAAATGGGTCTTGAATATAAGT 4825 || | || || | | | ||| || | || ||||| || ||| ||||| || Sbjct 197841 TTATCAATGGCATGGAG-AAGATAGTTCTTCTCATTTTC--ATCGGT----TATATAGGT 197893 Query 4826 GTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA 4885 || || | || ||| |||| || || || || || ||||| || | |||||| || Sbjct 197894 ATCAATCAAAAGTGAATAGGTTTCTGAGTGAATGTTCTCCATAGCTATTTAAAATCCATA 197953 Query 4886 AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTT 4945 |||||||| ||||| | ||||| ||||| |||| || || | |||||||| || Sbjct 197954 GAAGCATCTTGCTTCAGGAACTTGCACTTCTGTACAGAACTATTGGGCCAAGTTTTCATT 198013 Query 4946 TACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC 5005 || ||||| ||||| |||||||| || || | |||| ||||||| || ||| || Sbjct 198014 CACAATACCATCACTTGCTGCAAAGAAGGCAAGTACATATTTAATAAAGTGCTTTTCATC 198073 Query 5006 AGGCTTAAGTTTTTTCCA 5023 | | ||||||| ||| Sbjct 198074 GGCAGTGAGTTTTTCCCA 198091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045972347101