Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20tetraurelia_20[genbank_20GCA_5F000165425.1_202007-02- 02] 697 sequences; 72,094,543 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq697 316 2e-81 seq613 302 5e-77 seq197 259 5e-64 >seq697 Length=319182 Score = 316 bits (350), Expect = 2e-81 Identities = 556/801 (69%), Gaps = 13/801 (2%) Strand=Plus/Minus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || |||| || || ||||||||| || || || | ||||||||| ||||| || |||| Sbjct 147656 TACTCATGACTCCAGCTTTTTGATAGTCTCCCACTCTTCTTTCGAAGAAATTGGTTTTAC 147597 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTAC 23320 | | || ||||| | ||||| | ||||| ||||| | ||| || | ||| Sbjct 147596 CTTACAAAGATATCATATCCATCCACTCAAAAGGATTCTTCGAATTGTAAAT--CTTGGG 147539 Query 23321 ATGAT--AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC 23378 | | ||| | || | ||||||||||||||||||||||||| |||||||| Sbjct 147538 AGCACCCAATGCAAATATCAATCTATCTGCTACAAATTCAATATATTATTTCATCAAATT 147479 Query 23379 ATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 | || || || || |||| ||||| | || ||| | |||| ||||||||| Sbjct 147478 GGAATTCATTCCAATAAGTTCAACTGGTAGAGCTTCACTAATGAATTCTTTTTCAATTTC 147419 Query 23439 AACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACTT 23498 |||||| | ||||||| | ||| || | ||| | || ||||| ||| Sbjct 147418 AACAGCCGATGATATTATTTCATGAATTCTTTGATTACTCATTTTATTAACTAAATGCTT 147359 Query 23499 AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGA 23558 ||| | ||| ||||| || ||| || ||||||||||| ||| |||||||| || Sbjct 147358 GTACAGGAGACAAGCAAAGTCTGTATGGAGACCTTCATCCCTTGAAATTAATTCATTTGA 147299 Query 23559 AAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCC 23618 || || | ||| ||||| ||| || |||||| ||||||||||| ||| |||||| || Sbjct 147298 GAAGGTGAGTCCAGGCATCAATGATCTTTTTTTGATCCAAAATATGGCACAAAATGAACC 147239 Query 23619 GGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 |||||||| || || |||||||| |||||||| | | | | |||||| |||| Sbjct 147238 AGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATCAATCTCTCAGCAAATGAATCATT 147179 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACA-CACTCA-ATTGTT 23736 | || |||||||| | | ||| | |||||| || | | || || ||||| Sbjct 147178 CTCATTT---ATCCATTTCATAGCCCACATTGCCTTCTTTTGAATAACAGGCACATTGT- 147123 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||||| | || ||| | | ||||| | | ||| ||||| || || || || | Sbjct 147122 -CAATTGCATGTAGAAGATAGTTCTTTTCATTTTCATCGGTTATGTAAGTGTCTATCAAA 147064 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 | | ||| |||| ||||| |||||||| || || || | ||| |||||||| ||||| Sbjct 147063 AGAGAATAAGTTTCTGAATGTATATTTTCCATTGCTATTTAAAATCCATAAAAGCATCTG 147004 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAG-CTAAATTTTCGTTAACAATACC 23915 ||||||| || || ||| || || | || || |||| | || ||||| || |||||||| Sbjct 147003 GCTTCAGGCACTTAAACTTCTGTACAGAA-CTATTAGGCCAAGTTTTCATTCACAATACC 146945 Query 23916 ATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAA 23975 |||||| || ||||| || || || ||||| || |||||||| ||||||||| || | Sbjct 146944 ATCACTGGCTGCAAAAAAGGCTAGGACATACTTAATAAAATGCTTTTCATCAGCTGTAAG 146885 Query 23976 TTTTTTCCAATCATTAATATC 23996 |||| |||||| |||| ||| Sbjct 146884 CTTTTCCCAATCTTTAAGATC 146864 >seq613 Length=410769 Score = 302 bits (334), Expect = 5e-77 Identities = 554/802 (69%), Gaps = 21/802 (3%) Strand=Plus/Plus Query 23204 TCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCT 23263 ||||||| || |||||| || || ||||| | ||||||||| ||||| || ||||| | Sbjct 197314 TCATAACTCCAGCTTTTTGGTAGTCTCCAACTCTTCTTTCGAAGAAATTAGTTTTACCTT 197373 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACA-- 23321 ||| ||||| | ||||| | ||||| ||||| | ||| || | ||| | Sbjct 197374 ATAAGGATATCATATCCATCCATTCAAAAGGATTCTTTGAATTGTAGAT--CTTAGGAGC 197431 Query 23322 TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATA 23381 | ||| | || | |||||||| || ||||||||||||| |||||||| | Sbjct 197432 TCCCAATGCAAATATCAATCTATCTGCAACGAATTCAATATATTATTTCATCAAATTGGA 197491 Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441 || || || ||||||| ||||| | || ||| | |||| ||||||||| ||| Sbjct 197492 ATTCATTCCAATTAGTTCAACTGGTAAAGCTTCACTGATGAATTCTTTTTCAATTTCAAC 197551 Query 23442 AGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAA----ATACT 23497 |||| ||| |||| || |||| || | || | | | |||| || | Sbjct 197552 AGCAGAAGAAATGATTT---CATGAACTCGTTGAATAC-TCAACTTATTAATCATATGTT 197607 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | | | | ||| ||||| || ||| || |||||||| || ||| |||||||| | Sbjct 197608 TGTAAAGAAGACAAGCAAAGTCTGTATGGAGACCTTCATCTCTTGAAATTAATTCATTTG 197667 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 |||| || | ||||||||| ||| || |||||| ||||||||||| ||| |||||| | Sbjct 197668 AAAAGGTGAGTCCTGGCATCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAAC 197727 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | |||||||| || || |||||||| |||||||| | | | | | |||||| ||| Sbjct 197728 CAGAAAAGAAGATGCCTTCAACAGCAGCAAAGGCAATCAATCTTTCAGCAAATGAATCAT 197787 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACA-CACTCAATTGTT 23736 ||| || | |||||||| ||| ||| | || ||| || | | || || | | Sbjct 197788 TATTATTA---ATCCATTTCATTGCCCACATTGCTTTCTTTTGAATAACAGGCACAT-TA 197843 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || | | ||| | | || || | | ||| |||||||| |||||||| | Sbjct 197844 TCAATGGCATGGAGAAGATAGTTCTTCTCATTTTCATCGGTTATATAGGTATCAATCA-- 197901 Query 23797 AAACT--ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 ||| | ||| |||| || ||||| || || ||||| || | ||| ||||| || |||| Sbjct 197902 AAAGTGAATAGGTTTCTGAGTGAATGTTCTCCATAGCTATTTAAAATCCATAGAAGCATC 197961 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 | ||||||| | ||| || || || | || || || || ||||| || ||||||| Sbjct 197962 TTGCTTCAGGAACTTGCACTTCTGTACAGAACTATTGGGCCAAGTTTTCATTCACAATAC 198021 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 ||||||| || |||||||| ||||| |||||||| ||||| || ||||||| | | | Sbjct 198022 CATCACTTGCTGCAAAGAAGGCAAGTACATATTTAATAAAGTGCTTTTCATCGGCAGTGA 198081 Query 23975 ATTTTTTCCAATCATTAATATC 23996 ||||| |||||| |||| ||| Sbjct 198082 GTTTTTCCCAATCTTTAAGATC 198103 >seq197 Length=10380 Score = 259 bits (286), Expect = 5e-64 Identities = 223/275 (81%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||||||| || ||||| ||||||||| ||||| ||||||| ||||| ||||||||| | Sbjct 8460 TCTCACTCCGTCACCCAGACTGGAGTGCGGTGGCATGATCTCAGCTCAATGCAACCTCTG 8519 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||| | ||||||| | |||| ||||||| ||||| | |||||||||| ||||| Sbjct 8520 CCTCCTGCGTTCAAGTGAGTCTCATGCCTCACCCTCCCTATTAGCTGGGATCACAGGTGT 8579 Query 8464 AAGCCACCACGCCAAGCTAAT--TTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTT 8521 |||| || || ||||| ||| |||| |||||||||| ||||||||||||||| Sbjct 8580 GTACCACGACACCCGTCTAATCCTTTGGTATCCTTAGTAGAGACGGGGTTTCACCATGTT 8639 Query 8522 GGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGT 8581 || ||||||||| || |||||||| |||||||||||||| | || ||||||||||||| Sbjct 8640 GGTCAGGCTGGTTTCAAACTCCTGGCCTCATGTGATCCATCCATCTTGGCCTCCCAAAGT 8699 Query 8582 GCTGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 |||||||| ||||||| | |||||||| |||||| Sbjct 8700 GCTGGGATCACAGGCAGGGGCCACCGCATCTGGCC 8734 Score = 134 bits (148), Expect = 1e-26 Identities = 194/270 (72%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGA-TCTCCGCTCACTGCAACCTCCGCCTC 8407 |||||| ||||||||| ||||||||| | | || |||||| | ||||| ||| Sbjct 684 CTCTGTCATCCAGGCTGGTATGCAGTGGCTTCAGTCATAGCTCACATTAGCCTCCAACTC 743 Query 8408 CCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGC 8467 | | ||||| || |||||||||||| ||| ||||||||||| ||||||| | Sbjct 744 CTAGACTCAAGGGATCCTCCTGCCTCAGTTTCCCAAGTAGCTGGGACCACAGGCATGCAC 803 Query 8468 CACCACGCCAAGCTAATTTTTG--TATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCC 8525 ||| | | |||||| || | ||||||| ||||| | || || ||| |||||| || Sbjct 804 CACAGCATCCAGCTAAATTATTATTATTTTTTGTAGAAATAGAGTCACACTATGTTGTCC 863 Query 8526 AGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTG 8585 | ||| || | ||||||| |||| | |||| || || | ||||||||||||| Sbjct 864 ATCCTGC-CTTGTACTCCTGGACTCAAGCAATCCTCCCATCTTAGGCTCCCAAAGTGCTT 922 Query 8586 GGATTACAGGCATGAGCCACCGCGCCTGGC 8615 ||||||||| ||||||||| | |||||| Sbjct 923 GGATTACAGATGTGAGCCACCACCCCTGGC 952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521483456535800