Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5752 118 1e-21 >seq5752 Length=1520 Score = 118 bits (130), Expect = 1e-21 Identities = 549/867 (63%), Gaps = 27/867 (3%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||| || | ||||||||| ||||||||||| ||||| || || |||||| | Sbjct 220 TTTTTGATACTCTCCAACTCTCTTCTCAAAGAAATTGGTTTTGCCAGTTAGTGAAATCAT 279 Query 16003 TTCCATAAAATCAAAAGGATTTT----TTGAACAATAGTATTTATCGCATCCCAATTCCA 16058 ||||| | || |||||||||| |||| ||||||||| ||| | | | Sbjct 280 ATCCATCCATTCGAAAGGATTTTCGACTTGA----TAGTATTTAGGTACTCCTACGGCAA 335 Query 16059 ACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118 | | || ||||| || || || ||||| || ||| | | |||||||||| | Sbjct 336 AGAGTAGCCTATCAGCGACGAACATAATATATTGAGACATGAGCTTGGAGTTCATTCCGA 395 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC---AA 16175 | || | || |||| ||||| | || | ||| || | ||| || | || Sbjct 396 TCAACTCTACTGGGAGAGCTTCGCAGACGAATTCAAGTTCAATTTAAACAGCGTTGGTAA 455 Query 16176 TGATTATA-----TCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACAT 16230 |||| | ||||| | | | ||||| | | |||| ||| || | | Sbjct 456 TGATCTCAAGGATTCTCTCATTTGA-TATTTTATTG-----TTAAG--GTGCTTGTATAG 507 Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 | |||||| |||||| |||| || || || | | || | ||| ||||| || || Sbjct 508 GAGACAAGCGAAATCAGTGTGCATGCCCTCATCACGAGAGATAAGCTCATTTGAGAAAGT 567 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 || |||||||| || || || ||||| | ||| || || | | || || || ||||| Sbjct 568 GAGGCCTGGCATGAGACCACGCTTTTTTAGCCAGAAGATTGAGCAGAAAGACCCTGAAAA 627 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410 ||| || ||||||| || || || ||||| | || ||| | || | | | | ||| Sbjct 628 GAAAATTCCTTCAATAGCAGCGAAAGCAACGAGTCTTTCAGCATAGCTATTGTCTGAACT 687 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGC 16470 |||||| | | ||||| | ||||| | ||||| || || || Sbjct 688 G---ATCCATCTCATTGCCCATTCAGCTTTCTTAGTAACAACTGGGATAAAGGAGATAGC 744 Query 16471 ATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATA 16530 || || | || || || | | || |||| ||||| || || | | ||| Sbjct 745 TTTGAAGAGCATATCCTTCTCCTAGGCGTCGCTAATAAGGGTATCAATAAGGAGAGAATA 804 Query 16531 CATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGA 16590 | ||||| ||||| |||||||| || | ||| ||||| ||||| | ||||| | Sbjct 805 GGTCTCTGAGTGAATGTTCTCCATCATCATTTAAAATCCATAGAAGCAACGTGCTTCAGG 864 Query 16591 TATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 | || | ||||| | | || |||| || || || || || || || || ||||| Sbjct 865 GACTTAGATTTCAGTGCAGAATCTTTGAGCCAAATTCTCAACTACAATACCGTCACTAGC 924 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCA 16710 ||| || || || || | ||| ||||| || | ||||||||| ||| | ||| Sbjct 925 TGCGAAGAAAGCTAGAACGTGCTTAATGAAGTGGCGTTCGTTATCGTTGAGTCTCTCCCA 984 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770 || || ||| | | | ||||| ||||||| ||||||| || | || | | Sbjct 985 ATCTTTAACATCAGTGGCGAGATCGATCTCTTCTGCAGTCCAGAATGCTGCCATCTGATC 1044 Query 16771 TTTATACATTTTCCATATGTCTTCGTA 16797 || ||||||||||| ||||| | ||| Sbjct 1045 CTTGTACATTTTCCAGATGTCGTTGTA 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462365204472600