Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq19711 105 5e-18 seq20137 100 2e-16 seq20138 89.7 4e-13 >seq19711 Length=592 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | |||||| |||| |||||| |||||||||||||| |||||||||||| Sbjct 366 CCTCCTCTCAATCTAAGAACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCGCTG 307 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | || ||| || || |||| ||||| |||||||| || Sbjct 306 AGAGTTCTTCCGTCTTCGAGTTATTTTCCAGCGAAGATGAGTCTCTGTTGATCGGGAGGG 247 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || || | ||| || | | ||| ||||| ||| || Sbjct 246 ATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTTTCAATGGTGTCTGAGGGTTCAACG 187 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA 18331 || | |||||| ||||||| || | ||||| || || |||| ||| ||||| Sbjct 186 TCCAAGGTGATAGTTTTGCCAGTAAGGGTTTTAACGAAGATTTACATCTTTAA 134 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| ||| || || ||||| |||||||| |||||||| | | |||| | Sbjct 585 AGTCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTTCTT 526 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| || || || ||||||||||||||||||| ||| | |||||| Sbjct 525 CCATCTTCCAATTGCTTTCCGGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCC 466 Query 18228 TTATCGGCAATTTGTTG--CTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGG 18285 || || | | | ||| |||||| | ||| || || ||||| || | || Sbjct 465 TTGTC--CTAGATCTTGGCCTTGACATTCTCAATGGTATCTGAAGGCTCAACATCGAGGG 408 Query 18286 TGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| | ||||| || | || || || || |||| ||| Sbjct 407 TGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTACAT 368 >seq20137 Length=989 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| | |||| ||| || ||||| || ||||||||||||||||| | | ||| || Sbjct 175 AGTCTTAAGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTA 234 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | ||||| || || |||||||||| | |||||| ||| | ||||| Sbjct 235 CCATCTTCTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGGGAATTCCTTCT 294 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||| | ||| || | | | |||||| |||||| || | |||| Sbjct 295 TTGTCCTAAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAACATCTAAGGTG 354 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| || || | || || ||||| |||||||| Sbjct 355 ATGGTTTTACCAGTGAGGGTCTTAACAAAGATTTGCAT 392 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| | |||| |||||| ||||||||||| || || ||||| || | Sbjct 622 CCTCCTCTAAGTCTCAAGACCAAGTGAAGGGTTGATTCTTTCTGGATATTGTAATCAGAT 681 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| |||| || || ||| |||| ||||| | |||||| || Sbjct 682 AGGGTTCTGCCGTCTTCTAATTACTTTCCAGCAAAGATGAGTCTCTATTGATCAGGTGGG 741 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | |||||| | ||| ||||||| ||||| Sbjct 742 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGATGGCTCTACA 801 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | || || | || ||||| | ||||||||| || |||| |||||||| Sbjct 802 TCGAGAGTAATAGTCTTTCCGGTAAGTGTTTTTACGAAGATTTACATTTTTA 853 >seq20138 Length=732 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| | |||| |||||| ||||||||||| || || ||||| || | Sbjct 365 CCTCCTCTAAGTCTCAAGACCAAGTGAAGGGTTGATTCTTTCTGGATATTGTAATCAGAT 424 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| |||| || || ||| |||| ||||| | |||||| || Sbjct 425 AGGGTTCTGCCGTCTTCTAATTACTTTCCAGCAAAGATGAGTCTCTATTGATCAGGTGGG 484 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | |||||| | ||| ||||||| ||||| Sbjct 485 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGATGGCTCTACA 544 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | || || | || ||||| | ||||||||| || |||| |||||||| Sbjct 545 TCGAGAGTAATAGTCTTTCCGGTAAGTGTTTTTACGAAGATTTACATTTTTA 596 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || |||| ||| || ||||| || ||||||||||||||||| | | ||| | Sbjct 146 AGTCTGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAAAGGGTTCTT 205 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| || | ||| || || || | || | ||| |||||||| || | ||||| Sbjct 206 CCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGTGGGATACCTTCT 265 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| || | |||||| | | ||| ||||||| ||||| |||| ||| Sbjct 266 TTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCAACGTCAAGAGTG 325 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || || ||||| || || || || || | ||| Sbjct 326 ATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379226610932295