Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq19711 141 8e-29 seq10356 140 3e-28 seq16451 102 7e-17 seq20137 89.7 5e-13 >seq19711 Length=592 Score = 141 bits (156), Expect = 8e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||| |||| ||||| || || || || |||||||| |||||| | ||||||||||| Sbjct 136 AAAGATGTAAATCTTCGTTAAAACCCTTACTGGCAAAACTATCACCTTGGACGTTGAACC 195 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | |||| || || | || ||||||||||| | || ||||| Sbjct 196 CTCAGACACCATTGAAAACGTGAAGGCTAAGATCCAAGACAAGGAAGGTATCCCTCCCGA 255 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || ||| | || || |||||||| ||| | | |||||| | ||| | ||||| || Sbjct 256 TCAACAGAGACTCATCTTCGCTGGAAAATAACTCGAAGACGGAAGAACTCTCAGCGACTA 315 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||||||||| |||||||| |||| |||||| |||| || |||| Sbjct 316 CAACATCCAAAAAGAATCAACTCTTCACTTGGTTCTTAGATTGAGAGGAGGTA 368 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||| ||||| ||||| || || ||||| || |||||| |||| ||||| || || Sbjct 368 ATGTAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGATGTTGAGCCTTCA 427 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | || |||||||||||| | || ||||| || Sbjct 428 GATACCATTGAGAATGTCAAGGCCAAGATCTAGGACAAGGAAGGTATTCCCCCCGATCAA 487 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || || |||||||| | || | || || || Sbjct 488 CAAAGACTTATCTTCGCCGGAAAGCAATTGGAAGATGGAAGAACACTTTCTGACTACAAT 547 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGG 31416 |||||||| ||||| ||||| || |||| | ||||| || || Sbjct 548 ATTCAAAAGGAATCCACTCTCCACTTGGTCTTGAGACTTAGAGG 591 >seq10356 Length=2916 Score = 140 bits (154), Expect = 3e-28 Identities = 555/861 (64%), Gaps = 23/861 (3%) Strand=Plus/Minus Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 || |||| || || || ||||| || || || || || || |||||||| ||||| | Sbjct 1610 AGCCAAG-TTACAAACAGCCACTTCATCAGGAGATGTATATTCAACAATTTCAGTACACA 1552 Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147 ||| || ||||| || |||||||| || ||| |||| |||||||| ||||| Sbjct 1551 AATTTGAACTTTTTATTGTTCCCAAATTTTGCTAGTTAGACTTTCTATTGCACGTATCCT 1492 Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207 |||| ||||| || || || || ||||| | || ||||| || ||| | ||| ||| Sbjct 1491 TGTAAAGCATATAGGGTGTACCAGTCTCTAGTTGTGACTCTATAATCTATTACCA--TAG 1434 Query 23208 TCTGAGCGTGAACAC---GTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | | | || | ||| | | || |||| ||| || || ||||||| | | Sbjct 1433 CC--ATCTTGCTTATATGGTCTTTCTGCCTCTACCTTGTTCTTCATAGCTTTGGTAGAGC 1376 Query 23264 GCGTCAAATTCGGCACC----GTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 ||||||||| | || ||| || || | | |||| | | | || ||||| Sbjct 1375 TTGTCAAATTCCTCTCCCCAGGTATCACTCAATC---CTGGGC-ACTCATTAGGGCACAT 1320 Query 23320 GAGACTCCACA-TTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 ||| |||| || | || ||||| || | |||||| |||||||| || ||||| || | Sbjct 1319 TAGAGTCCAGTGTTCATTC-TTTTCTACTCTTCTCATGAAAAGATCTGGGATCCAGAGGG 1261 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 | ||||||| || || || | |||||| || || |||||| |||| | || | Sbjct 1260 CATAGAACAAATCACGAGCTCTGTTCTCCTCCTTACCATGGTTCTTCCTCAACTATAAGA 1201 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 |||| | | |||||||||||| ||||| | ||||| ||||| || || ||| || Sbjct 1200 AGTCGTAGATGTCCGCATGCCATGGCTCAACATAAACAGCAAAGGCTCCTTTTCTTTTCC 1141 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||| || | ||||| || || || |||| || ||||| | || | || || || | Sbjct 1140 CGCCACCTTAGTCGACATAGCGCGCAGTGTCATTAAACACTTTCAGAAGAGGAACTAGTC 1081 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 | ||| ||| | ||| | | || | | || || | ||| ||| Sbjct 1080 CTGTGGCATAACCGTTTGTGCCTCTAATATAGGAGTCAGTCGCACGTATGTTACTAACTG 1021 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | ||| || || || | | |||||| || | ||| || |||||| || || | | Sbjct 1020 ATACACCAATACCACCAGCGGCTTTCGAAATAACCGCAATTTATTTCAGTGTTTCAAATA 961 Query 23679 TGCCCTCGATGCTG--TCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTT 23736 |||| || | ||| || ||||| |||| | | ||| || ||| ||||| | ||| Sbjct 960 TGCCTTCAA--CTGAATCTTCTTTAGTCGTAAGTAGGAAGCAAGAACTCATTTATGGTTT 903 Query 23737 GGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAG 23796 || ||| | | ||| || || || | || || |||||| | || ||| || Sbjct 902 TGGTGTACCAGAATTGAAGAGAGTGGGAGTAGCATGAGTAAAGAAGAGGTTGCTCATAAG 843 Query 23797 ATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCAT 23856 || || || || | ||| | || | ||| || || ||||| ||| || | ||| Sbjct 842 ATCATAGGTCTCAAAGGCTGACTCCAAGTCTTCCTTATGAATACCAATGCTTACCCTCAT 783 Query 23857 CATCATGTATTGAGGTCTCTC 23877 | ||| | |||||||||||| Sbjct 782 AAGCATATGTTGAGGTCTCTC 762 >seq16451 Length=2876 Score = 102 bits (112), Expect = 7e-17 Identities = 367/563 (65%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 |||||| |||| | ||| || ||||| ||||| ||||| || || || ||| | || Sbjct 1256 ACAAACCTGTTTAAGGCTATTGAGGCTAGATTACATACAGCTACTTCATCTGGGCTAGTA 1315 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 || ||||||||||| ||||| ||||| || ||||| |||| || | || Sbjct 1316 TATTCTACAATTTCAGTACAGAGATTTGAACTTTTTATGCACCCCAGGTTTTGTTAATTA 1375 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 ||||| || || | ||| ||||| ||||| || || || || ||||| | || || Sbjct 1376 GATTTTCTGTTACAAGTATCTTTGTATAGCATATATGGAGTTCCAGTCTCAATTTGAGAT 1435 Query 23186 TCGATGATCGCTCGCCACATAG---TCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTC 23241 || | ||| | || |||| ||| ||| | | | ||| | | || || || Sbjct 1436 TCTACAATC--TAGCTCCATAACCATCT-AGCCTTTATA-GTCTTTCTGCCTCTTCCCTC 1491 Query 23242 TTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACA-GTCGGCCAGGCCGG 23300 ||| || || |||| || | || ||||| | || | || || | | | | || Sbjct 1492 TTCTTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCAGCATGTAGTCAAACCTGG 1551 Query 23301 GCGATTGCATCGGACACATGAGACTCCACA-TTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | |||||||| ||| |||| || | || ||||| || | | |||||||| Sbjct 1552 GC-ACTCATTAGGACACATTAGAGTCCATTCTTCATTC-TTTTCGACTCTTTTCATAAAA 1609 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 ||||| || ||||| || || ||||| || || | ||| | || |||||||| Sbjct 1610 AGATCTGGGATCCAGAGTGCATAGAATAGATCTCTGGCTCTATTTTCTTCTTTGCCATGA 1669 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 |||||| | | | | ||||| | | || |||||||| || || | || || ||| Sbjct 1670 TTCTTTCTAAGTTAAAGGAAGTCATAAATATCAGCATGCCAAGGTTCTACATAGACAGCA 1729 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || |||||| || || ||||| || || | || |||| || | ||| Sbjct 1730 AATGCTCCTTTTCTCTTTCCACCTCCTTGATCAACATACCTAGCAGTGTCATTAAAAACT 1789 Query 23540 CTTAGCATCGGCACGAGACCGTT 23562 | ||||| || || || ||||| Sbjct 1790 TTAAGCATAGGAACAAGTCCGTT 1812 >seq20137 Length=989 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || ||||| |||||| | || ||||| || || Sbjct 392 ATGCAAATCTTTGTTAAGACCCTCACTGGTAAAACCATCACCTTAGATGTTGAGCCCTCT 333 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||| ||||| | || ||||| || Sbjct 332 GACACAATCGAGAATGTTAAGGCCAAGATTTAGGACAAAGAAGGAATTCCCCCCGATCAA 273 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||| |||||| | ||||| || || | || || ||| Sbjct 272 TAGAGACTTATCTTCGCTGGTAAACAGCTAGAAGATGGTAGAACCTTATCTGACTACAAC 213 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || || || || |||| | ||||| || || || Sbjct 212 ATTCAAAAGGAGTCAACCCTCCACTTGGTCTTAAGACTCAGAGGTGG 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445624919316720