Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq16451 289 4e-73 seq6480 288 1e-72 seq5752 127 3e-24 >seq16451 Length=2876 Score = 289 bits (320), Expect = 4e-73 Identities = 810/1210 (67%), Gaps = 40/1210 (3%) Strand=Plus/Plus Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTT-GTGCTTCCGGGCTATC 62737 ||| | | |||||| || ||||| ||| ||| ||| | |||| | | || || || Sbjct 1001 GCAGCATGATAAATAGTCTCAAAAATCATCTCATTCA-ATCTAAGAGATTATGGATCTTC 1059 Query 62738 AAATGGATAATTTAAGAGAATAAAC-GCGTCCGCTAATCCTTGAACACCAATACCGATAG 62796 ||||||||| ||||||| |||| || || || || |||| |||||||||||| || | Sbjct 1060 AAATGGATA-TTTAAGAAGTTAAAGAGCATCTGCAAAACCTTAAACACCAATACCAATGG 1118 Query 62797 GTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATA 62855 |||||||| | ||| || || || ||||||| || || ||||||||| |||| || Sbjct 1119 GTCTATGTTTAAGATTTGA-ATATCTTGCTTCTGAAACTGGGTAATAATTATTATCAATT 1177 Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62915 || || || | ||| | |||| |||| ||||| | || || | | ||| || Sbjct 1178 ATCTTGTTTAAATTCTTAGTAATTCTTTTGGTAACATCATGCAACTTCTCATAGTCATAT 1237 Query 62916 CGCCCA---TCTATT---ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCT 62969 | ||| || |||||| |||| || || | || || |||||||| || ||| Sbjct 1238 TCTTTAGTTTCTGTTTTTACAAACCTGTTTAAGGCTATTGAGGCTAGATTACATACAGCT 1297 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 || |||| | | ||||| || || ||||| || ||||| || || || Sbjct 1298 ACTTCATCTGGGCTAGTATATTCTACAATTTCAGTACAGAGATTTGAACTTTTTATGCAC 1357 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || | ||||||| |||| ||| ||||||| | ||| || || || || ||||||| Sbjct 1358 CCCAGGTTTTGTTAATTAGATTTTCTGTTACAAGTATCTTTGTATAGCATATATGGAGTT 1417 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGAT 63149 ||||| ||||| |||||||||| |||| |||| | || ||||||||| | | Sbjct 1418 CCAGTCTCAATTTGAGATTCTACAATCTAGCTCCATAACCATCTAGCCTTTATAGTCTTT 1477 Query 63150 TTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA-AC 63208 || ||| | ||| ||| ||| ||| | | ||||| || |||||||| | Sbjct 1478 CTGCCTCTTCCCTCTTCTTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCAGCAT 1537 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-- 63266 | ||| || || || || |||| |||||||| | | ||| ||| |||| ||| Sbjct 1538 GTAGTCAAACCTGGG-CACTCATTAGGACACATTAGAGTCCATTCT---TCATTCTTTTC 1593 Query 63267 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTAT 63324 |||| ||||||||| ||||| || ||||| || || ||| ||||||||||| | ||||| Sbjct 1594 GACTCTTTTCATAAAAAGATCTGGGATCCAGAGTGC-ATAGAATAGATCTCTGGCTCTAT 1652 Query 63325 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT-AATATCAGAATGCCAC 63383 ||| || || || ||||||| |||| | ||||| | ||| |||||||| |||||| Sbjct 1653 TTTCTTCTTTGCCATGATTCTTTCTAAGTTAAAGGAA-GTCATAAATATCAGCATGCCAA 1711 Query 63384 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63443 ||||| | || | || | |||| | || ||||| ||||| | || ||| Sbjct 1712 GGTTCTACATAGACAGCAAATGCTCCTTTTCTCTTTCCACCTCCTTGATCAACATACCTA 1771 Query 63444 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG-ATATACCATTGGTACC 63502 || |||| |||| ||||| | | ||| |||| || ||||||| ||| ||| || || || Sbjct 1772 GCAGTGTCATTAAAAACTTTAAGCATAGGAACAAGTCCGTTTGCATA-ACCGTTAGTTCC 1830 Query 63503 GGAGATAT-AGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 63561 |||| || || || || | |||| | ||||| || || || ||||| Sbjct 1831 TCTAATATAAGAATCTGCT-GCTCTTATATCTGAGACTGATACTCCAATGCCACCTGCGG 1889 Query 63562 TTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGA 63621 || ||||| | || | || | || ||| |||| ||||||| ||| || Sbjct 1890 CCTTGGAGATAACAGCAATTTACTTGAGTGTTTCAAAGATACCTTCTACAGAATCTTCTT 1949 Query 63622 TCAT-GTTAAGTAGAAAACAGCTAGACATTT--GGTGACGAGTAGTTCCCGCATTAAATA 63678 |||| ||||| ||| ||||| | ||| | ||| | | || || || || || | Sbjct 1950 TCATAGTTAA-TAGGAAACAAGAACTCATCTAAGGTTTTGGG--GTACCTGCGTTGAAAA 2006 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 ||||||| ||| || || |||||| || | | || || ||| || |||| ||| | Sbjct 2007 GTGTAGGAGTAGCATGAGTGAACCATAATTGACTCATTAAATCGTAGGTTTCAAAAGCCG 2066 Query 63739 AGTCTATATCCCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 || | ||| || || || || |||| || | ||| | |||||| |||||||| Sbjct 2067 CTTCAAGATCATCTTTTTGGATGCCAATACT--TACTCTCATAAGCATGTGTTGAGGTCT 2124 Query 63797 TTCAACAATTTT-GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 ||| | |||||| ||| | |||| || | || | | |||| | |||| ||||||||| Sbjct 2125 TTCTATAATTTTAGTTCCCTCTTTT-AAAAGATAAGCTCTTTCTAGAGTTCTAAAACCAA 2183 Query 63856 AATAGTTGTA 63865 | || | ||| Sbjct 2184 AGTAATCGTA 2193 >seq6480 Length=2904 Score = 288 bits (318), Expect = 1e-72 Identities = 758/1139 (67%), Gaps = 30/1139 (3%) Strand=Plus/Minus Query 62736 TCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGAT 62794 ||||| ||||| ||| || | |||| || || ||||| |||| || |||||||||||| Sbjct 1837 TCAAA-GGATATTTTGAGCATCATAAGGGCATCAGCTAAACCTTAAATACCAATACCGAT 1779 Query 62795 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTA 62853 |||||| |||||| | |||||| | ||||| | | | |||||| | || | |||| Sbjct 1778 AGGTCTGTGTCTCATGTTAGAGTTGCGGGCTTCATCGCA-AGGATAGAAGTTGTTGTCTA 1720 Query 62854 TAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAA 62913 | ||| |||| | ||| | |||| || | || | | || || | |||||| Sbjct 1719 TGATTCTATTTAAATTACGAGTAATTTGCATGGCTACTTAATGAAGCTTATCATAATCAA 1660 Query 62914 ATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCT 62973 | |||| | | || | || | ||||| | ||| || || ||||||| Sbjct 1659 AGGCTCCATTTGAAATGAAGCGAGGAAGTGAGATTGATGCTAAATTGCATACAGCTACCT 1600 Query 62974 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTA 63033 ||| | | ||||| || |||||| ||||| ||| | |||||| ||||| | Sbjct 1599 CATCTGGGGAAGTATATTCAATGATCTCACAACAAAGGTTAGAGCTCTTGATGGTTCCAA 1540 Query 63034 AATTTTGTTGATTACTCTTTTTGTTA-CACGCATCCTTATAAAGAATGAATGGAGTACCA 63092 ||| | || |||||| || |||| || | ||| || ||||| ||| ||||||| ||| Sbjct 1539 GATTCTTTTAATTACTTTTACTGTTGGCATG-ATCTTTGTAAAGCATGTATGGAGTTCCA 1481 Query 63093 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 63152 |||||||| | ||| ||||| |||| ||| | | |||| |||| |||| ||| Sbjct 1480 GTTTCAATTTAGCTTTCAATAATAGCTTCCCAAAGTTTTTGAGC-TTTA--ATAGTTTT- 1425 Query 63153 TATCT-CCTTT---CTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206 ||| || | ||||| |||||| ||| || | ||||||| ||||| Sbjct 1424 --TCTGCCGATACCCTCTTGTTCGTATCTAGTGTATAGCTTAACGAACTCTTCTCCGTGG 1367 Query 63207 ACATTGTCCAAT-----CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 || | | ||| || || ||||| || || | || | ||| ||||| | || Sbjct 1366 ACCT---CAAATAAACCCTTGGC--TTCATTGGGGCAGAATAAGGTCCAGTCTCCATTAT 1312 Query 63262 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 | | |||| || ||||||||||||||||| ||| | ||| | || |||||||||| || Sbjct 1311 CTCTTACTCTTTCCATAAAGAGATCAGGAACCCACAAAGCAAAGAAAAGATCTCTTGCTC 1252 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | |||||||| || || ||| || || | ||||| | | || |||| |||| Sbjct 1251 TTTGTTCCTCTTTACCGTGATTTTTACGGAGCTATAGGAAATCAAAGATGTCAGCGTGCC 1192 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63441 | ||||| || || ||||| | | ||| | || || || ||||||| || | Sbjct 1191 ATGGTTCTAAATAGATGGCGAAAGATCCTTTTCTCTTACCACCACCTTGATCTACATAAC 1132 Query 63442 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63501 || || | ||| | ||||||| ||| || | || || || || ||| || || | Sbjct 1131 GGGCAGTTTCATTGAAGACTCTCAGCATGGGTACAAGGCCATTAGAATGACCGTTTGTTC 1072 Query 63502 CGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCA 63561 | ||| ||| |||| | || | ||| ||| || | || || | ||| || || Sbjct 1071 CCTTGATGTAGGATCCAGTAGCTCTAATGTTATGAACAGCAAGTCCAACTCCTCCAGCAC 1012 Query 63562 TTTTAGAGATTAATGCGCATCGTTTT-AACGTGTCATAGATGCCTTCTATGCTATCATCG 63620 | |||||||| | ||| || | || || || ||||| || || || |||||| Sbjct 1011 TCTTAGAGATAAGAGCG-ATATTCTTCAAAGTATCATATATACCCATAATTGAATCATCC 953 Query 63621 ATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAG 63680 |||| | || | |||||||| |||||| | || |||||| |||||||||| Sbjct 952 TTCATCATGAGCAAGAAACAGCTGCTCATTTGAGGTTTAGGAGTTCCGGCATTAAATAGA 893 Query 63681 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63740 ||||||| |||||| || |||||| | ||| | || || || || ||||| || || Sbjct 892 GTAGGAGTAGCGTGAGTGAACCATCTATCACTCATAAGGTTATATGTTTCAATTGCAGAA 833 Query 63741 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 || ||||| || |||||| || |||| ||||||| | ||| | |||||||| ||| Sbjct 832 TCAATATCTTCTTTATGAATACCGACTGAAACACGCAAGAGCATTTATTGAGGTCTCTCA 773 Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63859 |||||||| || || || | || || ||| |||| ||||||||||| ||||| || Sbjct 772 GCAATTTTGCCATTAATCTTAAGTAAATAAGATCTTTCTAAAGTTTTAAAGCCAAAGTA 714 >seq5752 Length=1520 Score = 127 bits (140), Expect = 3e-24 Identities = 394/599 (66%), Gaps = 8/599 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| |||||||| ||||| ||||| || | | || | || || || || ||||| Sbjct 511 ACAAGCGAAATCAGTGTGCATGCCCTCATCACGAGAGATAAGCTCATTTGAGAAAGTGAG 570 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || ||||||||||| ||||| || || || ||| || || |||||||| Sbjct 571 GCCTGGCATGAGACCACGCTTTTTTAGCCAGAAGATTGAGCAGAAAGACCCTGAAAAGAA 630 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG-CTGTCATGTA 33759 |||||||| | ||||| || |||| ||||| || |||| | | ||| || | Sbjct 631 AATTCCTTCAATAGCAGCGAAAGCAACGAGTCTTTCAGCATAGCTATTGTCTGAACTG-A 689 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 |||| | ||||| || || ||||| | ||| || || || || || | Sbjct 690 TCCATCTCATTGCCCATTCAGCTTTCTTAGTAACAACTGGGATAAAGGAGATAGCTTTGA 749 Query 33820 AGAG-ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 |||| ||| | || || | || ||| | ||||| || | ||| ||| | Sbjct 750 AGAGCATA-TCCTTCTCCTAGGCGTCGCTAATAAGGGTATCAATAAGGAGAGAATAGGTC 808 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || |||||||| || || ||| | |||||| ||||| || | || || | | Sbjct 809 TCTGAGTGAATGTTCTCCATCATCATTTAAAATCCATAGAAGCAACGTGCTTCAGGGACT 868 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 | | ||| || || |||| || || ||||| ||| || || || ||||| ||||| Sbjct 869 TAGATTTCAGTGCAGAATCTTTGAGCCAAATTCTCAACTACAATACCGTCACTAGCTGCG 928 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGTGTTAGTTTATTCCAATC 34057 || || || | || || || || || | |||| | | || | ||| | | |||||| Sbjct 929 AAGAAAGCTAGAACGTGCTTAATGAAGTGGCGTTCGTTATCGT-TGAGTCTCTCCCAATC 987 Query 34058 ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTT 34116 || | ||| | | | ||| | ||||| | ||||| |||| |||| |||| | | Sbjct 988 TTTAACATCAGTGGCGAGATCGATCTCTTCTGCAGTCCAGAATGCTGCCATCTG-ATCCT 1046 Query 34117 TATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 | ||||| ||||||||||| | || ||| || | ||| || ||||| || || ||| Sbjct 1047 TGTACATTTTCCAGATGTCGTTGTACCTGATAGGTAGAATGACGAATCTGTTAGGGTTT 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629617703766480