Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq16451 385 4e-102 seq6480 197 1e-45 seq5752 125 7e-24 >seq16451 Length=2876 Score = 385 bits (426), Expect = 4e-102 Identities = 1220/1859 (66%), Gaps = 64/1859 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || ||||| |||| || | || | ||||| |||| ||| || |||||| Sbjct 356 TCTACAGTAAATTTGATAGCATCTCTTGAAGGTTTTGACCTCAAATAGTATTGTCCAGTC 415 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||||||| | |||| || |||||||||||| |||| ||| || | | || || Sbjct 416 TTTAGCCCATTTTTCCAGCCATAAAAATGCATAGAAGTCATTTTAGCAAAGTTTGG-TTC 474 Query 36910 TC---TATATATATTGT--CATT--GATTGACTTTGATCTATAAACGCACCTCTGTCGGC 36962 || | || |||||| | || ||||| | | | ||| | ||||||| | Sbjct 475 TCCCATGTAAATATTGGTGCTTTAAGATTGGC----AAATGTAA--GGACCTCTGCCAAT 528 Query 36963 TGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTAT 37022 || | || | ||| | |||||| |||||||| || ||||| || | | || || Sbjct 529 AGCAAGATCAAGCATAACTCTTTGAGGAATCTCCCATACAGTTTTGTAAAGCTCCTTAAT 588 Query 37023 ATTATCTGGTAAA--TCTAAATGTTGA-ATAGAACCATTATGTAACACAATTGTATTCTT 37079 || | ||| | | | ||| |||| | ||| |||||| | || || || |||||| Sbjct 589 ATGTTATGGGATACTTTTAATTGTTTAGATACTTCCATTAGTTCCCAAAAGTGAATTCTT 648 Query 37080 TATGTCATTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACA 37137 || ||| || | ||| |||| | || | ||| | | ||||| |||||| Sbjct 649 AATATCAGAGTT--AAATAGATCTAAGTCAATCAAATCTTATACCAAATGTGGGTTTACA 706 Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 || || |||| |||||||||||| ||||||| ||| || || || |||| Sbjct 707 CAAACGAACTCACCAGCTAATACTCTTCTGGTATATACATTAGATGTGTAGGGCTCAAAA 766 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 | ||||||||||| ||| |||| ||||| |||||||| ||||| || |||| || ||| Sbjct 767 GTCTCATTATTACCTAAAATTTATGATGTGGATGCAGTGGGCATAGGGGCTAATAAAAGT 826 Query 37258 CTATTTCTCAATCCATGTGT-ATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATC 37316 |||||| || | | || | ||| | | | |||| | |||||| || ||| Sbjct 827 GAATTTCTAGCACCGTACTTCATGACATCT-TATCTCAGTTTTTCCCAATCATATCTATC 885 Query 37317 TGTT---GGGTTCTTTAACCACATATCATATTGTAGAATA--CCTTTACTCGCTGGAGAA 37371 || || ||||| ||| | ||| ||| ||||| |||||| ||| ||| Sbjct 886 TGAGCAGGGCTTCTTGTCCCATAAATCGAATT--AGAATTTTCCTTTAGAAAGTGGTGAA 943 Query 37372 TCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACT--AGATTCTAGTG 37429 | | | | | || |||| || | | |||| ||||| ||| || ||| | | Sbjct 944 CCTTCAAAACTTTCGTAAGCCCCATCTTTCATAGCGAGTTCT--ACTGAAGCTTCCATAG 1001 Query 37430 CGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGA 37489 | |||| ||| || || || ||||| ||| ||| | | || | || | Sbjct 1002 CAGCATGATAAATAGTCTCAAAAATCATCTCATTCAATCTAAGAGATTATGGATCTTCAA 1061 Query 37490 ATGCATAGCCCAATAATATAAACA-CATCAGCCAAACCCTGAACACCGATACCTATGGGT 37548 ||| ||| || || |||| | |||| || ||||| | |||||| ||||| |||||| Sbjct 1062 ATGGATATTT-AAGAAGTTAAAGAGCATCTGCAAAACCTTAAACACCAATACCAATGGGT 1120 Query 37549 CTATGTTTCTTATTAGA---TCTAGACGATTCTATCACTGGATAATAATTGATATCTATT 37605 |||||||| ||| || ||| | |||| ||||| |||||||| |||| ||| Sbjct 1121 CTATGTTTAAGATTTGAATATCTTGC---TTCTGAAACTGGGTAATAATTATTATCAATT 1177 Query 37606 ATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCT-CAACTTGTCGAACATAAA 37664 || || |||| ||| ||| | | |||| |||| || | |||||| || | | | Sbjct 1178 ATCTTGTTTAAATTCTTAGTAATTCTTTTGGTAAC-ATCATGCAACTTCTCATAGTCATA 1236 Query 37665 TACGTTATTAT------TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGC 37718 | | ||| | | | ||||| | | || | || || |||||||||||||||| Sbjct 1237 TTCTTTAGTTTCTGTTTTTACAAACCTGTTTAAGGCTATTGAGGCTAGATTACATACAGC 1296 Query 37719 AACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 ||||||||| | || || ||| || ||| || ||||||||||| || || || | Sbjct 1297 TACTTCATCTGGGCTAGTATATTCTACAATTTCAGTACAGAGATTT---GAACTTTTTAT 1353 Query 37779 TC---CCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGG 37835 | ||| || || ||| |||||| | ||||||| |||||| ||||| ||||| || Sbjct 1354 GCACCCCAGGTTTTGTTAATTAGATTTTCTGTTACAAGTATCTTTGTATAGCATATATGG 1413 Query 37836 CGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGAT 37895 ||||| || ||||||| || | ||| | ||||||| | ||| || || | | Sbjct 1414 AGTTCCAGTCTCAATTTGAGATTCTACAATCTAGCTCCATAACCATCTAGCCTTTATAGT 1473 Query 37896 CGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCA 37955 | | | | || || | ||| |||| | ||| | ||| | || || | ||||| Sbjct 1474 CTTTCTGCCTCTTCCCTCTTCTTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCA 1533 Query 37956 TACATCGCAT-AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTT 38014 ||| | || ||||| || || ||||||||||||| ||||||||||| |||| Sbjct 1534 G-CATGTAGTCAAACCTGGGCACTCATTAGGACACATTAGAGTCCATTCTTCATTCTTTT 1592 Query 38015 CTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTAT 38074 | || | || |||||| | ||| || | ||| | |||| |||| |||| ||| ||||| Sbjct 1593 CGACTCTTTTCATAAAAAGATCTGGGATCCAGAGTGCATAGAATAGATCTCTGGCTCTAT 1652 Query 38075 ATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCAT 38133 |||||| || || |||||||| |||| | || || || | |||||||| ||||| Sbjct 1653 TTTCTTCTTTGCCATGATTCTTTC-TAAGTTAAAGGAAGTCATAAATATCAGCATGCCAA 1711 Query 38134 GGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTA 38193 ||||||| ||| | | | ||||||| ||| || ||||||| |||| || ||| ||| Sbjct 1712 GGTTCTACATAGACAGCAAATGCTCCTTTTCTCTTTCCACCTCCTTGATCAACATACCTA 1771 Query 38194 ACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCG 38253 | |||| |||| | | | | | |||||| || | || || | | ||||| | || Sbjct 1772 GCAGTGTCATTAAAAACTTTAAGCATAGGAACAAGTCCGTTTGCATAACCGTTAGTTCCT 1831 Query 38254 GATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGT 38313 ||||||| | | |||| ||||| | || | ||| || |||||||| Sbjct 1832 CTAATATAAGAATCTGCTGCTCTTATATCTGAGACTGATACTCCAATGCCACCTGCGGCC 1891 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || || || | ||| || || | || ||||| |||||||||| | || || || Sbjct 1892 TTGGAGATAACAGCAATTTACTTGAGTGTTTCAAAGATACCTTCTACAGAATCTTCTTTC 1951 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 || | || || |||||| | ||| | ||| ||| || || ||||| || | |||| Sbjct 1952 ATAGTTAATAGGAAACAAGAACTCATCTAAGGTTTTGGGGTACCTGCGTTGAAAAGTGTA 2011 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAAT--AATTATATGTTTCTATTACATCAT 38491 |||| ||||| |||||||| || ||| || ||| || ||||| | | | | Sbjct 2012 GGAGTAGCATGAGTGAACCATAATT--GACTCATTAAATCGTAGGTTTCAAAAGCCGCTT 2069 Query 38492 CTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 | | |||| | || || || | | ||| ||||| ||||| ||||| |||||||||| Sbjct 2070 CAAGATCATCTTTTTGGATGCCAATACTTACTCTCATAAGCATGTGTTGAGGTCTTTCTA 2129 Query 38552 TTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 | |||||| | || ||| | ||||| | | |||||| ||| | | ||||| ||| Sbjct 2130 TAATTTTAGTTCCCTCTTTTAAAAGATAAGCTCTTTCTAGAGTTCTAAAACCAAAGTAA 2188 >seq6480 Length=2904 Score = 197 bits (218), Expect = 1e-45 Identities = 421/620 (68%), Gaps = 14/620 (2%) Strand=Plus/Minus Query 37998 CCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAA 38057 ||| ||| ||| | | ||| | ||||||||| | |||||| ||||| || ||| || Sbjct 1325 CCAGTCTCCATTATCTCTTACTCTTTCCATAAAGAGATCAGGAACCCACAAAGCAAAGAA 1266 Query 38058 TAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGA 38116 | |||| | | ||| | ||| || || || ||| || | | ||| ||| ||||| | Sbjct 1265 AAGATCTCTTGCTCTTTGTTCCTCTTTACCGTGATTTTTACGGA-GCTATAGGAAATCAA 1207 Query 38117 ATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTC 38176 | || ||||||||||||||||||| ||| || | | | |||| ||| ||| |||| | Sbjct 1206 AGATGTCAGCGTGCCATGGTTCTAAATAGATGGCGAAAGATCCTTTTCTCTTACCACCAC 1147 Query 38177 CCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAG 38236 | |||| | ||| | | || | ||| | | ||| | ||| ||||| | ||||||| Sbjct 1146 CTTGATCTACATAACGGGCAGTTTCATTGAAGACTCTCAGCATGGGTACAAGGCCATTAG 1087 Query 38237 ATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAA-T 38295 | | |||||| | || || || | || |||||| || ||| | | | ||| | Sbjct 1086 AATGACCGTTTGTTCCCTTGATGTAGGATCCAGTAGCTCTAATGTTA-TGAACAGCAAGT 1028 Query 38296 CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCT 38355 || | ||| || ||| || || || | |||| | || || |||||| ||||||| Sbjct 1027 CCAACTCCTCCAGCACTCTTAGAGATAAGAGCGATATTCTTCAAAGTATCATATATACCC 968 Query 38356 TCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTT 38415 || |||||||| || || | ||||| || ||||||||| |||||| Sbjct 967 ATAATTGAATCATCCTTCATCATGAGCAAGAAACAGCTGCTCATTTGAGGTTTAGGAGTT 908 Query 38416 CCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA--TTAT 38473 ||||| ||||||| ||||||| || || |||||||| | || || |||| |||| Sbjct 907 CCGGCATTAAATAGAGTAGGAGTAGCGTGAGTGAACCATCTATC--ACTCATAAGGTTAT 850 Query 38474 ATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCA 38533 ||||||| ||| || ||| ||||| | |||||||| | || || | || |||| Sbjct 849 ATGTTTCAATTGCAGAATCAATATCTTCTTTATGAATACCGACTGAAACACGCAAGAGCA 790 Query 38534 TATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAGATACGATTTTTCTA 38590 | | ||| ||||| || ||||| |||| || ||||||| ||| ||| |||||| Sbjct 789 TTTATTGAGGTCTCTCAGCAATTTTGCCATTAATC---TTAAGTAAATAAGATCTTTCTA 733 Query 38591 ATGTTTTTATTCCAAAATAA 38610 | ||||| | ||||| ||| Sbjct 732 AAGTTTTAAAGCCAAAGTAA 713 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 37126 TGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTA 37185 || ||||||||| | || || |||| || ||||||||||| || |||||| | || Sbjct 2200 TGAGGATTTACACACACGAATTCACCAGCTAGAACTCTTCTTGTGTAAATATTGGTGGTG 2141 Query 37186 TATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGT 37245 |||||||||| | |||||| |||| | |||||| |||||||| || ||||| || Sbjct 2140 TATGGTTCAAAGCTCTCATTGTTACCAAGGATTTGACTAGTAGATGCTGTTGGCATAGGG 2081 Query 37246 GCTATTAGAAG 37256 || | |||||| Sbjct 2080 GCAACTAGAAG 2070 >seq5752 Length=1520 Score = 125 bits (138), Expect = 7e-24 Identities = 371/556 (67%), Gaps = 16/556 (3%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || || ||||| || || || | || ||||| | || || ||||||| ||| || || Sbjct 548 ATAAGCTCATTTGAGAAAGTGAGGCCTGGCATGAGACCACGCTTTTTTAGCCAGAAGATT 607 Query 11726 GCAGCA-AATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 | |||| || || || |||||||| ||||| || | ||| || || || || | |||||| Sbjct 608 G-AGCAGAAAGACCCTGAAAAGAAAATTCCTTCAATAGCAGCGAAAGCAACGAGTCTTTC 666 Query 11785 TCCATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCA 11844 |||| |||| | |||||| | | ||||| ||||||||||| | || Sbjct 667 AGCATAGCTATTGTCTGAACTGATCCATCTCATTGCCCATTCAGCTTTCTTAGTAACAAC 726 Query 11845 TTCCATTGTTTCTATAGCGTTAAATAAATGCATTTT-TTCTA-TATTA-TCTCTTACATA 11901 | || ||||| || || | |||| | |||| || || || | | Sbjct 727 TGGGATAAAGGAGATAGCTTTGAAGA---GCATATCCTTCTCCTAGGCGTCGCTAATAAG 783 Query 11902 TGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCC 11961 ||||| || | | | ||| | ||||| ||||| || ||||| |||| |||||| Sbjct 784 GGTATCAATAAGGAGAGAATAGGTCTCTGAGTGAATGTTCTCCATCATCATTTAAAATCC 843 Query 11962 ATAGAAACATCGTGCCTCTGAACACTGTACATCCACAT--AAAATCTTTCCGCTAAATTC 12019 |||||| || ||||| || | ||| || || | | ||||||| || |||||| Sbjct 844 ATAGAAGCAACGTGCTTCAGGG-ACT-TAGATTTCAGTGCAGAATCTTTGAGCCAAATTC 901 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 ||| ||||||||| ||||||| ||| || || ||||| | || || || |||| | Sbjct 902 TCAACTACAATACCGTCACTAGCTGCGAAGAAAGCTAGAACGTGCTTAATGAAGTGGCGT 961 Query 12080 TCGTCTTTAGTTAATT-TATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAAC 12138 |||| | | ||| | | | |||||||| | | ||| | | | ||| | ||||| | Sbjct 962 TCGT-TATCGTTGAGTCTCTCCCAATCTTTAACATCAGTGGCGAGATCGATCTCTTCTGC 1020 Query 12139 GGTCCAAAAACTTGCCA-CTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAG 12197 ||||| || ||||| ||||| || |||||||||||||| || | ||| | |||| Sbjct 1021 AGTCCAGAATGCTGCCATCTGATCCTTG-TACATTTTCCAGATGTCGTTGTACCTGATAG 1079 Query 12198 GGAAAATAACGAACCT 12213 | | ||| ||||| || Sbjct 1080 GTAGAATGACGAATCT 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468376096085040