Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6480 302 6e-77 seq16451 298 8e-76 seq5752 154 2e-32 >seq6480 Length=2904 Score = 302 bits (334), Expect = 6e-77 Identities = 1200/1848 (65%), Gaps = 54/1848 (3%) Strand=Plus/Minus Query 78714 CAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTT 78773 ||| ||||| | ||| | | | ||| ||| | || | |||||||||| || || || Sbjct 2537 CAAAGTGAACTTAATTGCATCTCTTGCAGGTCTTGTTCTTAGATAGTACTGACCAGTCTT 2478 Query 78774 TAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGC 78833 ||| || ||| | |||||||| || | || || | | | | | || || Sbjct 2477 TAGTCCCTATTGCCAAGCATAGAAATGAGCGCTACTGAGCTTAGTAAAGGTGGCTTCAGC 2418 Query 78834 TATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTT 78893 |||| ||| || | | |||||| | ||||||| | | ||| || || | || Sbjct 2417 CATATAGATGTTTAGACTTTGACTCTAGCAAATGAAGGGTGCTCTGGCTCTTGCAAGATT 2358 Query 78894 TATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 || | |||||| || |||||||||||||||||||| | | ||||||||||| || Sbjct 2357 AATTAATTACTTTTGGGGGATTTCCCAAATAGTTTTATATAGGCTCTTAATATCTTAAGG 2298 Query 78954 AAGGTTTGT---ATTC--TGAATGGATCCACCATCTGCCA-TAATCCTATTCTTGATCTC 79007 || ||||| ||| |||| | || | ||| | |||| |||| | || Sbjct 2297 AA--TTTGTTTAATTTGTTGAACGCTGCCGTTGTATGCTACTAATTGATTTCTAACT-TC 2241 Query 79008 TTCATTCCATAATTTTCTCTCGGTTAA--AA--CTCTAAGGAGATGCGGATTAACT-ACT 79062 ||| |||| | | | || ||| || |||||| | ||| ||||| || || Sbjct 2240 ATCAGTCCAAAGTC----CAAGGCTAATCAAGTCTCTAACCAAATGAGGATTTACACACA 2185 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 ||| ||| |||| | ||||| | ||||||||||| |||| |||||||| | Sbjct 2184 CGAA-TTCACCAGCTAGAACTCTTCTTGTGTAAATATTGGTGGTGTATGGTTCAAAGCTC 2126 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 ||||| || || | |||||| ||| ||||| ||||||||||| || || | | Sbjct 2125 TCATTGTTACCAAGGATTTGACTAGTAGATGCTGTTGGCATAGGGGCAACTAGAAGTGAG 2066 Query 79183 TTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 |||||| |||||| | | || ||| |||| | ||||| | | | | || Sbjct 2065 TTTCTAGCACCGTACTTCTTAACTTCCTCTCTTAGGGCATCCCAGTTGTAGCGTTGAGTA 2006 Query 79243 GGGACAA---CATTCCAAAGATCATATT-GTAGAATACCGTTACTAGCGTATGATCCTGT 79298 || |||||||||||||| ||| | ||| | || | ||| | || |||| Sbjct 2005 GGTGGTTTCTCATTCCAAAGATCAAATTAGAAGAGTCCC-TAACTCAAGGGGGAGCCTGG 1947 Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTA--AT-GCTCC 79355 | | || |||| | ||||| ||| ||| | ||| ||| | || || || | Sbjct 1946 GAAGCTTAGATAATGGCCTTCTCTTTTGGCAATTTCT--ACT-GATGATAGCATAGCAGC 1890 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTA-TTGAGATCTTGTGCTTCTAGGCT-ATCA--A 79411 | ||| || || || || | |||||| |||| | | || | ||| ||| | Sbjct 1889 ATGATATATTGTCTCAAAGA-CTTCTTGGTTGAATTAGTAAGC----ACGCTCATCCTCA 1835 Query 79412 ATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 | ||||| ||| || | |||| || || ||||| |||| || |||||||||||||||| Sbjct 1834 AAGGATATTTTGAGCATCATAAGGGCATCAGCTAAACCTTAAATACCAATACCGATAGGT 1775 Query 79471 CTATGTCTCTTATTAGAAATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTATAAT 79529 || |||||| | ||||| | ||||| | | | |||||| | || | ||||| || Sbjct 1774 CTGTGTCTCATGTTAGAGTTGCGGGCTTCATCGCA-AGGATAGAAGTTGTTGTCTATGAT 1716 Query 79530 TTTATTGAGATTCCTGACTA-TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC 79588 | |||| | ||| | || || || || | || | | || || | ||||||| Sbjct 1715 TCTATTTAAATTAC-GAGTAATTTGCATGGCTACTTAATGAAGCTTATCATAATCAAAGG 1657 Query 79589 GTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648 ||||| | | || | | || ||||| | ||| || || |||||||||| Sbjct 1656 CTCCATTTGAAATGAAGCGAGGAAGTGAGATTGATGCTAAATTGCATACAGCTACCTCAT 1597 Query 79649 TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 | | ||||| || || ||| || |||||| | ||| |||||||| | || Sbjct 1596 CTGGGGAAGTATATTCAATGATCTCACAACAAAGGTTAGAGCTCTTGATGGTTCCAAGAT 1537 Query 79709 TTTGTTGATTACTCTTTTTGTTA-CACGCATCCTTATAAAGAATGAACGGAGTACCAGTT 79767 | | || |||||| || |||| || | ||| || ||||| ||| | ||||| |||||| Sbjct 1536 TCTTTTAATTACTTTTACTGTTGGCATG-ATCTTTGTAAAGCATGTATGGAGTTCCAGTT 1478 Query 79768 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTG-TA 79826 ||||| | ||| ||||| |||| ||| | | |||| |||| |||| || | Sbjct 1477 TCAATTTAGCTTTCAATAATAGCTTCCCAAAGTTTTTGAGC-TTTA--ATAGTTTTTCTG 1421 Query 79827 TCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCG 79884 | | ||||| |||||| || |||| ||||||| ||||| || || Sbjct 1420 CCGATACCCTCTTGTTCGTATCTAGTGTATAGCTTAACGAACTCTTCTCCGTGGACCTCA 1361 Query 79885 TCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGT 79944 ||| || ||| | || || | || | ||| ||||||| ||| |||||| | Sbjct 1360 AATAAACCCTTGGCTTCATTGGGGCAGAATAAGGTCCAGTCTCCATTATCTCTTACTCTT 1301 Query 79945 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCG 80004 | ||||||||||||||||| ||| | ||| | || |||||||| | ||| || ||||| Sbjct 1300 TCCATAAAGAGATCAGGAACCCACAAAGCAAAGAAAAGATCTCTTGCTCTTTGTTCCTCT 1241 Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||| || || | ||||| | | || |||| ||||| ||||| || Sbjct 1240 TTACCGTGATTTTTACGGAGCTATAGGAAATCAAAGATGTCAGCGTGCCATGGTTCTAAA 1181 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || ||||| | | ||| || || || || ||||||| || | || || | | Sbjct 1180 TAGATGGCGAAAGATCCTTTTCTCTTACCACCACCTTGATCTACATAACGGGCAGTTTCA 1121 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || | ||||||| ||| || | || ||||| || ||| || || || ||| ||| Sbjct 1120 TTGAAGACTCTCAGCATGGGTACAAGGCCATTAGAATGACCGTTTGTTCCCTTGATGTAG 1061 Query 80185 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 80244 |||| | || | ||| ||| || | || || | ||| || || | |||||||| Sbjct 1060 GATCCAGTAGCTCTAATGTTATGAACAGCAAGTCCAACTCCTCCAGCACTCTTAGAGATA 1001 Query 80245 AATGCGCATCGTTTT-AACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 | ||| || | || || |||||||| || ||| || |||||| |||| | || Sbjct 1000 AGAGCG-ATATTCTTCAAAGTATCATATATACCCATAATTGAATCATCCTTCATCATGAG 942 Query 80304 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 80363 | |||||||| |||||| | | |||||| |||||||||| ||||||| ||| Sbjct 941 CAAGAAACAGCTGCTCATTTGAGGTTTAGGAGTTCCGGCATTAAATAGAGTAGGAGTAGC 882 Query 80364 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 80423 ||| || |||||| | ||| || || || || || ||||| || || || ||||| Sbjct 881 GTGAGTGAACCATCTATCACTCATAAGGTTATATGTTTCAATTGCAGAATCAATATCTTC 822 Query 80424 TTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 80483 || |||||| || || | ||||||| | ||| | |||||||| ||| | || ||| Sbjct 821 TTTATGAATACCGACTGAAACACGCAAGAGCATTTATTGAGGTCTCTCAGCAATTTTGCC 762 Query 80484 ATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATA 80531 ||| || || | || |||||| |||| ||||||||||| ||||| || Sbjct 761 ATTAATCTTAAGTAAATAAGATCTTTCTAAAGTTTTAAAGCCAAAGTA 714 >seq16451 Length=2876 Score = 298 bits (330), Expect = 8e-76 Identities = 804/1200 (67%), Gaps = 36/1200 (3%) Strand=Plus/Plus Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT-GTGCTTCTAGGCTATCAAATGGAT 79417 |||||| || || |||||| ||| ||| | |||| | | || | | |||||||||| Sbjct 1009 ATAAATAGTCTCAAAAATCATCTCATTCA-ATCTAAGAGATTATGGATCTTCAAATGGAT 1067 Query 79418 AATTTAAGAGAATAAAC-GCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 | ||||||| |||| || ||||| || |||| |||||||||||| || ||||||||| Sbjct 1068 A-TTTAAGAAGTTAAAGAGCATCTGCAAAACCTTAAACACCAATACCAATGGGTCTATGT 1126 Query 79477 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 79536 | ||| ||| | ||||||| || || ||||||||| |||| || || || || Sbjct 1127 TTAAGATTTGAATATCTTGCTTCTGAAACTGGGTAATAATTATTATCAATTATCTTGTTT 1186 Query 79537 AGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA--- 79593 | |||| | ||| |||| ||||| | | || | | ||| || | | Sbjct 1187 AAATTCTTAGTAATTCTTTTGGTAACATCATGCAACTTCTCATAGTCATATTCTTTAGTT 1246 Query 79594 TCTATT---ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650 ||| || |||||| |||| || || | || || |||||||| || ||||| |||| Sbjct 1247 TCTGTTTTTACAAACCTGTTTAAGGCTATTGAGGCTAGATTACATACAGCTACTTCATCT 1306 Query 79651 GCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | | ||||| || |||||||| ||||| || || || ||| || | ||| Sbjct 1307 GGGCTAGTATATTCTACAATTTCAGTACAGAGATTTGAACTTTTTATGCACCCCAGGTTT 1366 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 |||| |||| ||| ||||||| | ||| || || || || | ||||| ||||| ||| Sbjct 1367 TGTTAATTAGATTTTCTGTTACAAGTATCTTTGTATAGCATATATGGAGTTCCAGTCTCA 1426 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTG-TATCT 79829 || |||||||||| |||| |||| | || ||||||||| || ||| | || Sbjct 1427 ATTTGAGATTCTACAATCTAGCTCCATAACCATCTAGCCTTTAT---AGTCTTTCTGCCT 1483 Query 79830 CTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAA-ACATCGTC 79886 ||| ||||| || |||| | ||| | | ||||| || |||||||| | | ||| Sbjct 1484 CTTCCCTCTTCTTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCAGCATGTAGTC 1543 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGT 79944 || || || || || | ||||||||| | | ||| ||| ||| || ||| |||| | Sbjct 1544 AAA-CCTGGGCACTCATTAGGACACATTAGAGTCCATTCTTCAT--TCTTTTCGACTCTT 1600 Query 79945 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTC 80003 |||||||| ||||| || ||||| || || ||| ||||||||||||| ||||| || || Sbjct 1601 TTCATAAAAAGATCTGGGATCCAGAGTGC-ATAGAATAGATCTCTGGCTCTATTTTCTTC 1659 Query 80004 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT-AATATCAGAATGCCACGGTTCCA 80062 || || ||||||| |||| | ||||| | ||| |||||||| |||||| ||||| | Sbjct 1660 TTTGCCATGATTCTTTCTAAGTTAAAGGAA-GTCATAAATATCAGCATGCCAAGGTTCTA 1718 Query 80063 AGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 80122 || | || | |||| || || ||||| ||||| | || ||||| |||| Sbjct 1719 CATAGACAGCAAATGCTCCTTTTCTCTTTCCACCTCCTTGATCAACATACCTAGCAGTGT 1778 Query 80123 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATAT 80182 |||| ||||| | | ||| |||| || || || | ||| || || || |||| Sbjct 1779 CATTAAAAACTTTAAGCATAGGAACAAGTCCGTTTGCATAACCGTTAGTTCCTCTAATAT 1838 Query 80183 -AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 || || || || | |||| | ||||| || || || ||||| || ||| Sbjct 1839 AAGAATCTGCT-GCTCTTATATCTGAGACTGATACTCCAATGCCACCTGCGGCCTTGGAG 1897 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTT 80300 || | || | || | || ||| |||| || |||| ||| || |||| ||| Sbjct 1898 ATAACAGCAATTTACTTGAGTGTTTCAAAGATACCTTCTACAGAATCTTCTTTCATAGTT 1957 Query 80301 AAGTAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 80358 || ||| ||||| | ||| | ||| | || || || || || | |||||| Sbjct 1958 AA-TAGGAAACAAGAACTCATCTAAGGTTTTG--GGGTACCTGCGTTGAAAAGTGTAGGA 2014 Query 80359 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 80418 | ||| || || |||||| || | || || || ||| || |||| ||| | ||| | | Sbjct 2015 GTAGCATGAGTGAACCATAATTGACTCATTAAATCGTAGGTTTCAAAAGCCGCTTCAAGA 2074 Query 80419 TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 80478 || || || || || | || | ||| | |||||| ||||||||||| | || Sbjct 2075 TCATCTTTTTGGATGCCAATACTTACTCTCATAAGCATGTGTTGAGGTCTTTCTATAATT 2134 Query 80479 TT-GTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 || ||| | |||| || | |||| | |||| | |||| |||||||||| || | ||| Sbjct 2135 TTAGTTCCCTCTTTT-AAAAGATAAGCTCTTTCTAGAGTTCTAAAACCAAAGTAATCGTA 2193 >seq5752 Length=1520 Score = 154 bits (170), Expect = 2e-32 Identities = 400/599 (67%), Gaps = 8/599 (1%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| |||||||| ||||| ||||| || | | || || || || || || ||||| Sbjct 511 ACAAGCGAAATCAGTGTGCATGCCCTCATCACGAGAGATAAGCTCATTTGAGAAAGTGAG 570 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||| || ||||||||||| ||||| || || || ||| || ||||| ||||||| Sbjct 571 GCCTGGCATGAGACCACGCTTTTTTAGCCAGAAGATTGA-GCAGAAAGACCCTGAAAAGA 629 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG-CTGTCATGT 50136 | |||||||| | || || || ||||| ||||| || |||| || | ||| || Sbjct 630 AAATTCCTTCAATAGCAGCGAAAGCAACGAGTCTTTCAGCATAGCTATTGTCTGAACTG- 688 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| || || ||||| | ||| || || || || || Sbjct 689 ATCCATCTCATTGCCCATTCAGCTTTCTTAGTAACAACTGGGATAAAGGAGATAGCTTTG 748 Query 50197 AAGAG-ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||| ||| | || || | || ||| | ||||| || | ||| ||| | Sbjct 749 AAGAGCATA-TCCTTCTCCTAGGCGTCGCTAATAAGGGTATCAATAAGGAGAGAATAGGT 807 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || |||||||| || || ||| | |||||| ||||| || | || || | | Sbjct 808 CTCTGAGTGAATGTTCTCCATCATCATTTAAAATCCATAGAAGCAACGTGCTTCAGGGAC 867 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 | | ||| || || |||| || ||| ||||| ||| || || |||||||| ||||| Sbjct 868 TTAGATTTCAGTGCAGAATCTTTGAGCCAAATTCTCAACTACAATACCGTCACTAGCTGC 927 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 || || || | || || || || || || |||||| | ||| | | |||||| Sbjct 928 GAAGAAAGCTAGAACGTGCTTAATGAAGTGGCGTTCGTTATCGTTGAGTCTCTCCCAATC 987 Query 50436 ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTTTT 50494 || | ||| | | | ||| | ||||| | ||||| |||| |||| |||| | | Sbjct 988 TTTAACATCAGTGGCGAGATCGATCTCTTCTGCAGTCCAGAATGCTGCCATCTG-ATCCT 1046 Query 50495 TATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 | ||||| ||||||||||| | || ||| || | ||| || ||||| || || ||| Sbjct 1047 TGTACATTTTCCAGATGTCGTTGTACCTGATAGGTAGAATGACGAATCTGTTAGGGTTT 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718040830461240