Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5752 147 2e-30 >seq5752 Length=1520 Score = 147 bits (162), Expect = 2e-30 Identities = 508/779 (65%), Gaps = 19/779 (2%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||| || | |||||| || |||||||| || ||||| || ||||| || | Sbjct 220 TTTTTGATACTCTCCAACTCTCTTCTCAAAGAAATTGGTTTTGCCAGTTAGTGAAATCAT 279 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 ||||| | || || |||||| | ||| | | | |||| |||| | || | Sbjct 280 ATCCATCCATTCGAAAGGATTT-TCGACTTGATAGTATTTAGGTACTCCTACGGCAAAGA 338 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||| |||||||| | ||| ||||||||||||||| | | | ||||| || || | Sbjct 339 GTAGCCTATCAGCGACGAACATAATATATTGAGACATGAGCTTGGAGTTCATTCCGATCA 398 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||| || | | | | ||||| ||| || | ||||| | | ||| Sbjct 399 ACTCTACTGGGAGAGCTTCGCAGACGAATTCAAGTTCAATTTAAACAGCGT---TGGTAA 455 Query 13819 TAATTGTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13875 | || || || |||||| || || || || || || | | | ||| | Sbjct 456 TGATCTCAAGGATTCTCTCATTTGATATTTTATTGTTAAGGTGCTTGTATAGGAGACAAG 515 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13935 | |||||| || | ||||||||| | | ||||| || ||||| || || | |||| Sbjct 516 CGAAATCAGTGTGCATGCCCTCATCACGAGAGATAAGCTCATTTGAGAAAGTGAGGCCTG 575 Query 13936 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATT 13994 |||| | || || ||||||| ||| || |||| |||| || ||||| |||||||| ||| Sbjct 576 GCATGAGACCACGCTTTTTTAGCCAGAAGATTG-AGCAGAAAGACCCTGAAAAGAAAATT 634 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-AT 14053 || |||| ||||| || || | | || ||| || | ||| || | | | || Sbjct 635 CCTTCAATAGCAGCGAAAGCAACGAGTCTTTCAGCATA----GCTATTGTCTGAACTGAT 690 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 |||| | | |||||||||| ||| || ||| || || ||||| || || Sbjct 691 CCATCTCATTGCCCATTCAGCTTTCTTAGTAACAACTGGGATAAAGGAGATAGCTTTGAA 750 Query 14114 TAA-ATATTCCTTCTCTTTAGTACTTGA-AATGTATGTATCAATAAGTAAGCTATACATT 14171 | |||| ||||||| | || | | ||| ||||||||||| | ||| | Sbjct 751 GAGCATAT-CCTTCTCCT-AGGCGTCGCTAATAAGGGTATCAATAAGGAGAGAATAGGTC 808 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 || ||||| ||||| ||||| || | ||| ||||| ||||| | ||||| | | Sbjct 809 TCTGAGTGAATGTTCTCCATCATCATTTAAAATCCATAGAAGCAACGTGCTTCAGGGACT 868 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 | | ||| | | | ||||||| |||||||| ||| || ||||| ||||||||||| Sbjct 869 TAGATTTCAGTGCAGAATCTTTGAGCCAAATTCTCAACTACAATACCGTCACTAGCTGCG 928 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 || || || | | || ||||| |||| | || | || ||||||| | | |||||| Sbjct 929 AAGAAAGCTAGAACGTGCTTAATGAAGTGGCGTTCGTTATCGTTGAGTCTCTCCCAATC 987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479575740329400