Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq16451 297 3e-75 seq6480 280 2e-70 seq5752 123 3e-23 >seq16451 Length=2876 Score = 297 bits (328), Expect = 3e-75 Identities = 808/1205 (67%), Gaps = 38/1205 (3%) Strand=Plus/Plus Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT-GTGCTTCCGGGCTATCAAAT 71496 ||| |||||| || || |||||| ||| ||| | |||| | | || || |||||| Sbjct 1005 CATGATAAATAGTCTCAAAAATCATCTCATTCA-ATCTAAGAGATTATGGATCTTCAAAT 1063 Query 71497 GGATAATTTAAGAGAATAAAC-GCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 ||||| ||||||| |||| || ||||| || |||| ||| |||||||| || ||||| Sbjct 1064 GGATA-TTTAAGAAGTTAAAGAGCATCTGCAAAACCTTAAACACCAATACCAATGGGTCT 1122 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 ||| | ||| ||| | ||||||| || || ||||||||| |||| || || || Sbjct 1123 ATGTTTAAGATTTGAATATCTTGCTTCTGAAACTGGGTAATAATTATTATCAATTATCTT 1182 Query 71616 ATTGAGATTTCTGACTATTACTTT-GACCACATCCTTTAGTTTGAGAAAATCAAATCTCC 71674 || | ||| || | || | |||| | ||||| | | || | | ||| || Sbjct 1183 GTTTAAATT-CTTAGTAATTCTTTTGGTAACATCATGCAACTTCTCATAGTCATATTCTT 1241 Query 71675 CA---TCTATT---ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCT 71728 | ||| || |||||| ||| ||||| | || || |||||||| || ||||| | Sbjct 1242 TAGTTTCTGTTTTTACAAACCTGTTTAAGGCTATTGAGGCTAGATTACATACAGCTACTT 1301 Query 71729 CATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 71788 ||| | | ||||| || ||||||||| || ||||| || || ||| || | Sbjct 1302 CATCTGGGCTAGTATATTCTACAATTTCAGTACAGAGATTTGAACTTTTTATGCACCCCA 1361 Query 71789 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAG 71848 ||||||| |||| ||| ||||||| | ||| || || || ||| | ||||| |||| Sbjct 1362 GGTTTTGTTAATTAGATTTTCTGTTACAAGTATCTTTGTATAGCATATATGGAGTTCCAG 1421 Query 71849 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT 71908 | ||||| |||||||||| |||| |||| | || ||||||||| | || || Sbjct 1422 TCTCAATTTGAGATTCTACAATCTAGCTCCATAACCATCTAGCCTTTATAGTCTTTCTGC 1481 Query 71909 ATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT 71966 ||||| ||||| || |||| | ||| | | ||||| || |||||||| |||| Sbjct 1482 --CTCTTCCCTCTTCTTCATATTTTTCATAAAGTTTCTCGAATTCTTCTCCCCA-GCATG 1538 Query 71967 --GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--A 72022 ||| || || || || ||||| |||||||| | | ||| ||| ||| || ||| | Sbjct 1539 TAGTCAAA-CCTGGGCACTCATTAGGACACATTAGAGTCCATTCTTCAT--TCTTTTCGA 1595 Query 72023 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGC 72081 ||| ||||||||| ||||| || ||||| || || ||| ||||||||||||| ||||| Sbjct 1596 CTCTTTTCATAAAAAGATCTGGGATCCAGAGTGC-ATAGAATAGATCTCTGGCTCTATTT 1654 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT-AATATCAGAATGCCACGG 72140 || || || || ||||||| |||| | ||||| | ||| |||||||| |||||| || Sbjct 1655 TCTTCTTTGCCATGATTCTTTCTAAGTTAAAGGAA-GTCATAAATATCAGCATGCCAAGG 1713 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 ||| | || | || | |||| | || ||||| ||||| | || ||||| Sbjct 1714 TTCTACATAGACAGCAAATGCTCCTTTTCTCTTTCCACCTCCTTGATCAACATACCTAGC 1773 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 |||| |||| ||||| | | ||| |||| || || || | ||| || || || Sbjct 1774 AGTGTCATTAAAAACTTTAAGCATAGGAACAAGTCCGTTTGCATAACCGTTAGTTCCTCT 1833 Query 72261 GATAT-AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319 |||| || || || || | |||| | ||||| || || || ||||| | Sbjct 1834 AATATAAGAATCTGCT-GCTCTTATATCTGAGACTGATACTCCAATGCCACCTGCGGCCT 1892 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 | ||||| | || | || | || ||| |||| || |||| | ||| || ||| Sbjct 1893 TGGAGATAACAGCAATTTACTTGAGTGTTTCAAAGATACCTTCTACAGAATCTTCTTTCA 1952 Query 72380 T-GTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAGTTCCCGCATTAAATAAGG 72436 | ||||| ||| ||||| | ||| | ||| | || || || || || | | Sbjct 1953 TAGTTAA-TAGGAAACAAGAACTCATCTAAGGTTTTG--GGGTACCTGCGTTGAAAAGTG 2009 Query 72437 TAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATT 72496 |||||| ||| || || |||||| || | || || || ||| || |||| ||| | || Sbjct 2010 TAGGAGTAGCATGAGTGAACCATAATTGACTCATTAAATCGTAGGTTTCAAAAGCCGCTT 2069 Query 72497 CTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAA 72556 | | ||| || || || || | || | ||| | ||| || ||||||||||| | Sbjct 2070 CAAGATCATCTTTTTGGATGCCAATACTTACTCTCATAAGCATGTGTTGAGGTCTTTCTA 2129 Query 72557 CGATCTT-GTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 72615 || || ||| | |||| || | || | | |||| | |||| |||||||||| || Sbjct 2130 TAATTTTAGTTCCCTCTTTT-AAAAGATAAGCTCTTTCTAGAGTTCTAAAACCAAAGTAA 2188 Query 72616 TTGTA 72620 | ||| Sbjct 2189 TCGTA 2193 >seq6480 Length=2904 Score = 280 bits (310), Expect = 2e-70 Identities = 753/1132 (67%), Gaps = 16/1132 (1%) Strand=Plus/Minus Query 71491 TCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549 ||||| ||||| ||| || | |||| || || ||||| |||| || ||||||||||| Sbjct 1837 TCAAA-GGATATTTTGAGCATCATAAGGGCATCAGCTAAACCTTAAATACCAATACCGAT 1779 Query 71550 AGGTCTGTGTCTCTTATTAGAAATTTCAGCTTC-TGGAATAGGATAATAATTAATATCTA 71608 ||||||||||||| | ||||| | ||||| | | | |||||| | || | |||| Sbjct 1778 AGGTCTGTGTCTCATGTTAGAGTTGCGGGCTTCATCGCA-AGGATAGAAGTTGTTGTCTA 1720 Query 71609 TAATTTTATTGAGATTTCTGACTA-TTACTTTGACCACATCCTTTAGTTTGAGAAAATCA 71667 | ||| |||| | ||| | || || || || | || | | || || | ||||| Sbjct 1719 TGATTCTATTTAAATTAC-GAGTAATTTGCATGGCTACTTAATGAAGCTTATCATAATCA 1661 Query 71668 AATCTCCCATCTATTACAAACACGTTCAAGGCA-ACAGATGCCAGATTACAAACGGCTAC 71726 || |||| | | || || ||| | | ||||| | ||| || || ||||| Sbjct 1660 AAGGCTCCATTTGAAATGAAG-CGAGGAAGTGAGATTGATGCTAAATTGCATACAGCTAC 1602 Query 71727 CTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCC 71786 ||||| | | ||||| || || ||| ||||| ||| | |||||||||||| Sbjct 1601 CTCATCTGGGGAAGTATATTCAATGATCTCACAACAAAGGTTAGAGCTCTTGATGGTTCC 1542 Query 71787 TAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATCCTTATAAAGAATAAACGGAGTAC 71845 | ||| | || |||||| || |||| || | ||| || ||||| || | ||||| | Sbjct 1541 AAGATTCTTTTAATTACTTTTACTGTTGGCATG-ATCTTTGTAAAGCATGTATGGAGTTC 1483 Query 71846 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCT 71905 |||||||||| | ||| ||||| |||| ||| | | |||| |||| || || | Sbjct 1482 CAGTTTCAATTTAGCTTTCAATAATAGCTTCCCAAAGTTTTTGAGC-TTTAATAGTTT-T 1425 Query 71906 TGTATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGC 71963 | | | | ||||| |||||| || |||| ||||||| ||||| | Sbjct 1424 TCTGCCGATACCCTCTTGTTCGTATCTAGTGTATAGCTTAACGAACTCTTCTCCGTGGAC 1365 Query 71964 ATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTAC 72023 | ||| || |||||| || || | || | ||| ||||||| ||| |||| Sbjct 1364 CTCAAATAAACCCTTGGCTTCATTGGGGCAGAATAAGGTCCAGTCTCCATTATCTCTTAC 1305 Query 72024 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTC 72083 || || ||||||||||||||||| ||| | ||| | || |||||||| | ||| || || Sbjct 1304 TCTTTCCATAAAGAGATCAGGAACCCACAAAGCAAAGAAAAGATCTCTTGCTCTTTGTTC 1245 Query 72084 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 72143 ||| || || ||| || || | ||||| | | || |||| ||||| ||||| Sbjct 1244 CTCTTTACCGTGATTTTTACGGAGCTATAGGAAATCAAAGATGTCAGCGTGCCATGGTTC 1185 Query 72144 CAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 72203 || || ||||| | | ||| | || || || ||||||| || | || || Sbjct 1184 TAAATAGATGGCGAAAGATCCTTTTCTCTTACCACCACCTTGATCTACATAACGGGCAGT 1125 Query 72204 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGAT 72263 | ||| | ||||||| ||| || | || ||||| || ||| || || || ||| Sbjct 1124 TTCATTGAAGACTCTCAGCATGGGTACAAGGCCATTAGAATGACCGTTTGTTCCCTTGAT 1065 Query 72264 ATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 ||| |||| | || | ||| || || | || || | ||| || || | ||||| Sbjct 1064 GTAGGATCCAGTAGCTCTAATGTTATGAACAGCAAGTCCAACTCCTCCAGCACTCTTAGA 1005 Query 72324 GATTAATGCGCATCGTTTT-AACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 ||| | ||| || | || || |||||||| || ||| || ||||||| |||| Sbjct 1004 GATAAGAGCG-ATATTCTTCAAAGTATCATATATACCCATAATTGAATCATCCTTCATCA 946 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 | || | |||||||| |||||| | | |||||| |||||||||| ||||||| Sbjct 945 TGAGCAAGAAACAGCTGCTCATTTGAGGTTTAGGAGTTCCGGCATTAAATAGAGTAGGAG 886 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502 |||||| || |||||| | ||| || || || || || ||||| || || || |||| Sbjct 885 TAGCGTGAGTGAACCATCTATCACTCATAAGGTTATATGTTTCAATTGCAGAATCAATAT 826 Query 72503 CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 | || ||| || || || | ||||||| | ||| | |||||||| ||| | || | Sbjct 825 CTTCTTTATGAATACCGACTGAAACACGCAAGAGCATTTATTGAGGTCTCTCAGCAATTT 766 Query 72563 TGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 72614 || ||| || || | || || ||| |||| ||||||||||| ||||| || Sbjct 765 TGCCATTAATCTTAAGTAAATAAGATCTTTCTAAAGTTTTAAAGCCAAAGTA 714 >seq5752 Length=1520 Score = 123 bits (136), Expect = 3e-23 Identities = 396/603 (66%), Gaps = 16/603 (3%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| |||||||| ||||| |||||||| | | || | || || || || ||||| Sbjct 511 ACAAGCGAAATCAGTGTGCATGCCCTCATCACGAGAGATAAGCTCATTTGAGAAAGTGAG 570 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||| || ||||||||||| ||||| || || || ||| || || || ||||||| Sbjct 571 GCCTGGCATGAGACCACGCTTTTTTAGCCAGAAGATTGA-GCAGAAAGACCCTGAAAAGA 629 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC---AT 42239 | |||||||| | || || || |||| ||||| || |||| | | |||| | Sbjct 630 AAATTCCTTCAATAGCAGCGAAAGCAACGAGTCTTTCAGCATA---GCTATTGTCTGAAC 686 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| | ||||| || || ||||| | ||| || || || || | Sbjct 687 TGATCCATCTCATTGCCCATTCAGCTTTCTTAGTAACAACTGGGATAAAGGAGATAGCTT 746 Query 42300 TAAAGAG-ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 | ||||| ||| | || || | || ||| | ||||| || | ||| ||| Sbjct 747 TGAAGAGCATA-TCCTTCTCCTAGGCGTCGCTAATAAGGGTATCAATAAGGAGAGAATAG 805 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 | ||||| |||||||| || || ||| | |||||| ||||| || | || || | Sbjct 806 GTCTCTGAGTGAATGTTCTCCATCATCATTTAAAATCCATAGAAGCAACGTGCTTCAGGG 865 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 || | | ||| || || |||| || ||| ||||| || || || |||||||| ||| Sbjct 866 ACTTAGATTTCAGTGCAGAATCTTTGAGCCAAATTCTCAACTACAATACCGTCACTAGCT 925 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CCGGTGTTAATTTATTCC 42536 || || || || | || || || || || | ||||| || || | | | | || Sbjct 926 GCGAAGAAAGCTAGAACGTGCTTAATGAAGTGGCGTTCGTTATCGTTG--AGTCTCTCCC 983 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG-CTTCTGCC 42595 |||| || | ||| | | | ||| | |||||| | ||||| |||| || | |||| Sbjct 984 AATCTTTAACATCAGTGGCGAGATCGATCTCTTCTGCAGTCCAGAATGCTGCCATCTG-A 1042 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 | || ||||| |||||||| || | || || || | ||| || ||||| || || Sbjct 1043 TCCTTGTACATTTTCCAGATGTCGTTGTACCTGATAGGTAGAATGACGAATCTGTTAGGG 1102 Query 42656 TTT 42658 ||| Sbjct 1103 TTT 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670926188807160