Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq19711 113 5e-20 seq5918 91.5 1e-13 seq3881 82.4 8e-11 >seq19711 Length=592 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | ||| || |||| || ||||||||||| |||||||| ||||| Sbjct 366 CCTCCTCTCAATCTAAGAACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCGCTG 307 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||||||||| ||| ||||| |||| || | || ||||||||||| Sbjct 306 AGAGTTCTTCCGTCTTCGAGTTATTTTCCAGCGAAGATGAGTCTCTGTTGATCGGGAGGG 247 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | ||| | ||||| | |||||| || Sbjct 246 ATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTTTCAATGGTGTCTGAGGGTTCAACG 187 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | ||||| ||||| |||| ||| Sbjct 186 TCCAAGGTGATAGTTTTGCCAGTAAGGGTTTTAACGAAGATTTACAT 140 >seq5918 Length=2920 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||| | || ||||| ||||| || ||||| || || || || || Sbjct 2606 CAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGACAAGGTTCTTCCATC 2665 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | || || || ||| ||||||| | || ||||| || || || ||||||||||| Sbjct 2666 TTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGGATTCCTTCTTTGTC 2725 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||| || || | | || | ||||| | |||||| || || | ||| | ||| Sbjct 2726 TTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACGTCTAGAGTAATCGT 2785 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||||| || || |||||||| | ||| Sbjct 2786 CTTGCCCGTCAAAGTCTTGACGAATATCTACAT 2818 >seq3881 Length=979 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 142954 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 143013 ||||||||||| ||| | | ||| | || || || |||||||| ||| |||||||| Sbjct 135 ATGGCCTCCTCTTAATCTGAGAACAAGATAGATAGTTGATTCTTTAGCTATATTGTAATC 194 Query 143014 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 143073 | || | || || || || ||||| |||||| | ||||| | | |||||| | Sbjct 195 GGATATCATCCTATTATCCTCTAGCTGTTTTCCAGCAAATATCAGCCTCTACTGATCAGC 254 Query 143074 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTA-GCTGTTCCACCGTGTCCGTGGGTT 143132 ||| ||||| ||| || | |||| ||| ||| | ||| || || || || ||||| | Sbjct 255 AGGGATGCCCTCTCTGGCATTAATCTTTGATTTAACGCT-CTCAACTGTATCAGTGGGCT 313 Query 143133 CTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || | | || | || ||| | | || ||| || || |||||||| Sbjct 314 CAACATCGATTGCCAAGGATTTACCGCTGATTGATTTAACAAAGATTTGCAT 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506853479967120