Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq20138 163 7e-35 seq20137 163 7e-35 seq5918 158 3e-33 seq19711 145 2e-29 seq10285 107 4e-18 seq3881 100 7e-16 >seq20138 Length=732 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | || ||||||||||| ||||| || ||| Sbjct 362 ATACCTCCTCTAAGTCTCAAGACCAAGTGAAGGGTTGATTCTTTCTGGATATTGTAATCA 421 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| ||||| |||||||||| || ||||||||||| || || |||| ||||||||| Sbjct 422 GATAGGGTTCTGCCGTCTTCTAATTACTTTCCAGCAAAGATGAGTCTCTATTGATCAGGT 481 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || || ||||| || || || || || | || || || ||| Sbjct 482 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGATGGCTCT 541 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||||||||| || |||||||||||||| || || | |||||| Sbjct 542 ACATCGAGAGTAATAGTCTTTCCGGTAAGTGTTTTTACGAAGATTTACATTTT 594 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || | || | || || || || ||||| || |||||||| Sbjct 137 CCACCTCTGAGTCTGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAA 196 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || ||||| || || || ||||| ||||| || ||||| | ||||||||||| || || Sbjct 197 AGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGTGGG 256 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| | ||||| || || |||||||| | ||| || ||||| || || Sbjct 257 ATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCAACG 316 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || |||||||| ||||| | || || || || |||| ||| Sbjct 317 TCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 363 >seq20137 Length=989 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || || || | || | || |||||||||| || ||||||||| Sbjct 391 ATACCACCTCTTAGTCTGAGGACCAAGTGAAGAGTTGATTCTTTCTAGATGTTATAGTCA 450 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || || || ||||| ||||| || ||||| | ||||||||||| || Sbjct 451 GAGAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGT 510 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| | ||||| || || |||||||| | ||| || ||||| || Sbjct 511 GGGATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCA 570 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || |||||||| ||||| | || || || || |||| ||| Sbjct 571 ACGTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 620 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | || ||||||||||| ||||| || ||| Sbjct 619 ATACCTCCTCTAAGTCTCAAGACCAAGTGAAGGGTTGATTCTTTCTGGATATTGTAATCA 678 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| ||||| |||||||||| || ||||||||||| || || |||| ||||||||| Sbjct 679 GATAGGGTTCTGCCGTCTTCTAATTACTTTCCAGCAAAGATGAGTCTCTATTGATCAGGT 738 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || || || ||||| || || || || || | || || || ||| Sbjct 739 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATAGTGTCAGATGGCTCT 798 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||||||||| || |||||||||||||| || || | |||||| Sbjct 799 ACATCGAGAGTAATAGTCTTTCCGGTAAGTGTTTTTACGAAGATTTACATTTT 851 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || |||||||||| |||||||| |||||||| ||||| ||| Sbjct 196 GTTGACTCCTTTTGAATGTTGTAGTCAGATAAGGTTCTACCATCTTCTAGCTGTTTACCA 255 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || |||| |||||| || || ||||||||||| |||| |||||| || || Sbjct 256 GCGAAGATAAGTCTCTATTGATCGGGGGGAATTCCTTCTTTGTCCTAAATCTTGGCCTTA 315 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || || |||| || || || |||||||| || || Sbjct 316 ACATTCTCGATTGTGTCAGAGGGCTCAACATCTAAGGTGATGGTTTTACCAGTGAGGGTC 375 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 376 TTAACAAAGATTTGCAT 392 >seq5918 Length=2920 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || | || | ||| | || ||||| || || ||||| |||||||| Sbjct 2592 CCACCTCTGAGTCTCAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGAC 2651 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||| | || ||||| ||||| || || |||||||||||||| || Sbjct 2652 AAGGTTCTTCCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGG 2711 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||||||| || |||||||| || || || || |||| ||| || ||||| || Sbjct 2712 ATTCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACG 2771 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| ||||| ||||| || || | || || || ||||||| |||||| Sbjct 2772 TCTAGAGTAATCGTCTTGCCCGTCAAAGTCTTGACGAATATCTACATTTT 2821 >seq19711 Length=592 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||||| || | || | || |||||||| || || || ||||| Sbjct 369 ATACCTCCTCTCAATCTAAGAACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGTAGTCG 310 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||| |||||||| |||| ||||||||| || || || ||||||||||| ||| Sbjct 309 CTGAGAGTTCTTCCGTCTTCGAGTTATTTTCCAGCGAAGATGAGTCTCTGTTGATCGGGA 250 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || || || ||||| | ||| || ||||| Sbjct 249 GGGATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTTTCAATGGTGTCTGAGGGTTCA 190 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | || ||||| || |||||||| ||||| || || || | ||| || Sbjct 189 ACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTTTTAACGAAGATTTACATCTT 137 >seq10285 Length=3207 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104327 TTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAG 104386 || ||||| ||||||||||| | |||| ||| | | | || ||| | | |||||||| Sbjct 875 TTCATTCCACCTCTTAGCCTTAACACTAAATGAAGTCTTGAATCTCTTTATATATTATAA 934 Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 |||| | ||||||| ||||||| || ||| || |||||||| || |||| ||||||| Sbjct 935 TCAGCCAAAGTTCTATTATCTTCTAATTATTTCCCTGCAAAAATAAGTCTCTATTGATCA 994 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATC 104473 ||||| || |||||| ||| || ||| Sbjct 995 GGAGGGATACCTTCTGCATCTTGTATC 1021 >seq3881 Length=979 Score = 100 bits (110), Expect = 7e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || || || |||| | || |||||||| ||||| || || ||| Sbjct 139 CCTCCTCTTAATCTGAGAACAAGATAGATAGTTGATTCTTTAGCTATATTGTAATCGGAT 198 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | | ||| || ||||| |||||||||||||| || ||||||| ||||||| ||| Sbjct 199 ATCATCCTATTATCCTCTAGCTGTTTTCCAGCAAATATCAGCCTCTACTGATCAGCAGGG 258 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || ||| | | | |||||||| ||| || | || || ||||| | || || || Sbjct 259 ATGCCCTCTCTGGCATTAATCTTTGATTTAACGCTCTCAACTGTATCAGTGGGCTCAACA 318 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || | || | | ||||| | | || ||| ||||| || ||||| || Sbjct 319 TCGATTGCCAAGGATTTACCGCTGATTGATTTAACAAAGATTTGCATCTT 368 Score = 96.9 bits (106), Expect = 8e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||||| ||| | || || || |||||| || ||| | | ||||||||||||| Sbjct 368 TTCCACCTCTTAACCTTAATAGTAAATATAATGTTGAATCTCTTTATATATTATAGTCAG 427 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || |||| || |||||||| |||||| | ||||| |||||| | ||||| | Sbjct 428 ATGCTTTTCTTCCATCTTCTAGGCATTTTCCTGAAAAAACTAGCCTTTACTGATCTTAGG 487 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| ||| ||| | | ||||||||||| || Sbjct 488 GTAGTCCCTCTACAGCTTGAATCTTTGCCTT 518 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104319 ATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAA 104378 |||||| | ||||| ||||||| || | |||| |||| || || ||||| |||| Sbjct 587 ATACTTAGGTCATTCCTCCTCTTAATCTTAAAACTAAGTGTAGAGTGGAATCTTTTTGAA 646 Query 104379 TATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCT 104438 ||||||||||||| | | |||| ||| ||||| ||||||||||||||||| |||| Sbjct 647 TATTATAGTCAGAGACATTTCTGGAGTCCTCTAGACCTTTTCCAGCAAAAATTAATCTCT 706 Query 104439 GTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTAT 104498 || ||| | || || ||||| || | ||| || || ||| | || | ||| | Sbjct 707 ATTAATCTGCTGGAATACCTTCCTTCTATGAAATTTTAAACTTGACAGTCTCAATGGTGT 766 Query 104499 CGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAG 104534 | | ||||| || || | | ||| |||| |||| Sbjct 767 CAGTTGGTTCAACATCGATTACAATGCTCTTTCCAG 802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151023824553828