Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq19711 136 4e-27 seq20137 120 3e-22 seq20138 104 2e-17 seq5918 95.1 1e-14 seq15980 89.7 5e-13 >seq19711 Length=592 Score = 136 bits (150), Expect = 4e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| ||||||||||||| | |||||||| | ||| ||||| ||||| | ||| | Sbjct 374 TTTACATACCTCCTCTCAATCTAAGAACCAAGTGAAGAGTTGATTCTTTTTGGATGTTGT 315 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | ||| | || || || | |||||| | ||||| | ||| || |||| Sbjct 314 AGTCGCTGAGAGTTCTTCCGTCTTCGAGTTATTTTCCAGCGAAGATGAGTCTCTGTTGAT 255 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | ||||| |||||||| ||||| | || || ||||| ||| | | ||||| | | Sbjct 254 CGGGAGGGATACCTTCCTTGTCTTGGATCTTAGCCTTCACGTTTTCAATGGTGTCTGAGG 195 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||| | ||||| ||||| |||||||| ||||| || ||||| | ||| Sbjct 194 GTTCAACGTCCAAGGTGATAGTTTTGCCAGTAAGGGTTTTAACGAAGATTTACAT 140 Score = 107 bits (118), Expect = 2e-18 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 94783 TCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCAT 94842 |||||| | || ||| |||||||| | ||| ||||||||||| | || || || | Sbjct 592 TCCTCTAAGTCTCAAGACCAAGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCAG--AA 535 Query 94843 AGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 |||||| ||| |||| || |||||| | ||||| | |||||| ||||| || ||| Sbjct 534 AGTGTTCTTCCATCTTCCAATTGCTTTCCGGCGAAGATAAGTCTTTGTTGATCGGGGGGA 475 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| || || || |||||||| | | || || | | || || Sbjct 474 ATACCTTCCTTGTCCTAGATCTTGGCCTTGACATTCTCAATGGTATCTGAAGGCTCAACA 415 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || || || ||||| | ||| Sbjct 414 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATTTACAT 368 >seq20137 Length=989 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || || |||||||| | || || |||||||| | ||| || || Sbjct 166 CCACCTCTGAGTCTTAAGACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAG-- 223 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| | ||| || |||||||| || | ||||| | ||| | ||||| || | Sbjct 224 ATAAGGTTCTACCATCTTCTAGCTGTTTACCAGCGAAGATAAGTCTCTATTGATCGGGGG 283 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||||||||| ||||| || ||||| || ||| ||||||| | | || | Sbjct 284 GAATTCCTTCTTTGTCCTAAATCTTGGCCTTAACATTCTCGATTGTGTCAGAGGGCTCAA 343 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||||||||| ||||| || || || |||||||| ||||| Sbjct 344 CATCTAAGGTGATGGTTTTACCAGTGAGGGTCTTAACAAAGATTTGCAT 392 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||| | || | |||||||| | ||| ||||| || | | ||||| Sbjct 386 TTTGCATACCACCTCTTAGTCTGAGGACCAAGTGAAGAGTTGATTCTTTCTAGATGTTAT 445 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | || | |||||| || || |||||| | || || ||||| || |||| Sbjct 446 AGTCAGAGAGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGAT 505 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || ||||||||||| || || || || |||||||| | | |||||| Sbjct 506 CGGGTGGGATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAG 565 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || ||||||| ||||| || |||||||| | ||| || || ||||||| ||| Sbjct 566 GCTCAACGTCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 620 >seq20138 Length=732 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||||||| | || || |||||||| | ||| || || Sbjct 137 CCACCTCTGAGTCTGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAA 196 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| || || |||||| | || || ||||| || ||||| || || Sbjct 197 AGGGTTCTTCCATCCTCAAGTTGCTTTCCGGCGAAAATCAATCTCTGTTGATCGGGTGGG 256 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||||||||| || || || || |||||||| | | |||||| | || ||| Sbjct 257 ATACCTTCTTTATCTTAGATCTTAGCCTTGACATTTTCAATGGTGTCACTAGGCTCAACG 316 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| || |||||||| | ||| || || ||||||| ||| Sbjct 317 TCAAGAGTGATAGTCTTTCCAGTCAAAGTCTTAACGAAGATCTACAT 363 >seq5918 Length=2920 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || ||| ||||| || | ||| ||||||||||| | || || || | Sbjct 2592 CCACCTCTGAGTCTCAAGACCAAATGGAGAGTGGATTCCTTTTGGATATTGTAGTCAGAC 2651 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| |||| | ||||| ||||||| | ||| || ||||| || || Sbjct 2652 AAGGTTCTTCCATCTTCCAATTACTTTCCTGCAAAGATCAGTCTCTGTTGATCAGGGGGG 2711 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | ||| || ||||| ||| | | ||||||| | | || ||| Sbjct 2712 ATTCCTTCTTTGTCTTGAATCTTGGCCTTCACGTTCTCTATGGTGTCAGAGGGTTCAACG 2771 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || | ||| || || || |||| ||| Sbjct 2772 TCTAGAGTAATCGTCTTGCCCGTCAAAGTCTTGACGAATATCTACAT 2818 >seq15980 Length=3053 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 94767 TAAAATTTTACACT-CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 ||||||| | ||| |||||||| | || || || || || | |||||||| |||| Sbjct 2413 TAAAATTCTCCACCGCCTCCTCTGAGTCTTAAAACTAAATGAAGTGTAGATTCATTTTAA 2354 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | |||| ||| || ||| | || || | || |||| |||| || | |||| Sbjct 2353 ATTCTATATTCGTCCAAGGTGAAGTGATTTTCTAATTGCATTCCAGCAAAAATCATTCTT 2294 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 | |||||||||||||| |||||||| || |||| |||| | || | | | | || Sbjct 2293 TATTGATCTGGAGGAATTCCTTCTTTATCCTAAACTTTTTCTTTTAATGATTCAATTGTA 2234 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGAT 95001 ||| | | | || ||| ||||| ||||||||||| | |||||| ||||| || Sbjct 2233 TCACCTCCATTGCAGTAAATAGTGATTGTTTTTCCAGTTAAAGTTTTTACAAATAT 2178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448148917976760