Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraurostyla_20sp._20PUJRC_5FG6_20[genbank_20GCA_5F001272965.2_20201 5-12-23] 25,391 sequences; 57,107,439 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq23162 132 5e-26 seq23963 91.5 2e-13 >seq23162 Length=1931 Score = 132 bits (146), Expect = 5e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171170 GTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 171229 || ||||| || || || || || || ||||| || ||||| ||| |||||| |||||| Sbjct 1479 GTATTCCAGGCCGAGCATAATATTCTTATGCATCCGTTCCACATGTTAGGTGTTGCAGGT 1538 Query 171230 ATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATC 171289 | || || ||| || || |||||||| ||||| ||||| || || ||| |||| Sbjct 1539 GTATTTGGCGGTTCGCTGTTTTCAGCAATGCATGGTTCGCTAGTTACTTCATCTTTAATT 1598 Query 171290 AGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAA 171349 | || |||||||| ||||| | || || || ||||| ||||||||||| Sbjct 1599 CGCGAAACAACTGAAAACGAATCTGCTAATGCGGGTTACCGTTTCGGCCAAGAAGAAGAG 1658 Query 171350 ACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGC 171405 || ||||| ||||| || ||||| || ||||| ||| | ||||||||||| || || Sbjct 1659 ACTTATAATATTGTAGCAGCTCACGGTTACTTTGGTCGTTTAATCTTCCAATACGC 1714 >seq23963 Length=704 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 171516 TCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATG 171575 |||||||||||||||||||||||||| | | || | || ||||||| || Sbjct 425 TCAACTTCAACCAATCAGTTGTAGATTCTCAAGGCCGTGTATTAAATACATGGGCTGACA 484 Query 171576 TTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCC 171635 || | ||| | || ||| | || |||||||| ||||| ||| | || ||||| ||||||| Sbjct 485 TTATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCACATAACTTCC 544 Query 171636 CACTAGACCTAGCATCTGCT 171655 ||||||| |||| || ||| Sbjct 545 CACTAGATTTAGCTTCAGCT 564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 171408 CATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTAT 171467 ||||||||||| |||||||||||||||||| | |||| | || || || ||| | | Sbjct 44 CATTCAACAACAGCCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTATGTATCT 103 Query 171468 GGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATT 171516 |||| || || | ||| | | |||||||| |||||||||||||| || Sbjct 104 GGTTTACAGCTTTAGGTTTATCAACAATGGCTTTCAACCTTAACGGGTT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570087803811240